BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3960.p
         (277 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981599|ref|YP_001354977.1| DNA modification methylase [Jan...   458   e-130
gi|152982010|ref|YP_001354391.1| phage related DNA methyltransfe...    77   1e-15
gi|152981982|ref|YP_001354447.1| DNA modification methylase [Jan...    74   7e-15

>gi|152981599|ref|YP_001354977.1| DNA modification methylase
           [Janthinobacterium sp. Marseille]
          Length = 273

 Score =  458 bits (1178), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 210/265 (79%), Positives = 238/265 (89%), Gaps = 10/265 (3%)

Query: 13  WLDRVYCEDALDAGGGLARIPDGSVDLLIADPPYGLGKDYGNDSDKLDTAAYLAWTEQWV 72
           W DR++CEDAL    GLARIPD ++DL+IADPPYGLGKDYGNDSDKLD  AYL+W EQW+
Sbjct: 4   WRDRIFCEDAL---AGLARIPDAAIDLIIADPPYGLGKDYGNDSDKLDADAYLSWMEQWI 60

Query: 73  DAVLPKLKPNGSLYIFLTWRNSPEIFVMLKQRMTMINEIIWDRRVPSMGGSVRRYSSVHD 132
           DA LPKLKPNGSLYIFLTWR SPE+FVMLK+RMTM+NEI+WDRRVPSMGG  R++SSVHD
Sbjct: 61  DAALPKLKPNGSLYIFLTWRYSPEVFVMLKKRMTMLNEIVWDRRVPSMGGGTRKFSSVHD 120

Query: 133 TIGFFARAKDYFFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREH 192
           TIGFFA+AKDY+FDLDA+RIPYDA+TKKARSRSIFVGAKWLEMGYNPKDVWSVSRLH+EH
Sbjct: 121 TIGFFAKAKDYYFDLDAVRIPYDAETKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHKEH 180

Query: 193 KERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARRCGRHFTGFELNPDYC 252
           +ERADHPTQKPLE+VERM+KASCPPGGVVLDPFMGSGTTA AA+RCGRHF GFELN +YC
Sbjct: 181 RERADHPTQKPLEIVERMLKASCPPGGVVLDPFMGSGTTAAAAKRCGRHFVGFELNAEYC 240

Query: 253 ELIRQRLDAID-------APAPASQ 270
           E+I +RL A++       APAP  +
Sbjct: 241 EMIEKRLQALESIPASNIAPAPGQE 265


>gi|152982010|ref|YP_001354391.1| phage related DNA
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 423

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 178 NPKDVWSVSRLHREHKERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARR 237
           +  DVW + + H+       HPT KP+E+VER ++ S  PG VVLDPF GSGTT +AA +
Sbjct: 316 DQSDVWQIKKPHKNDL----HPTMKPVELVERAIRNSSHPGNVVLDPFGGSGTTLIAAEK 371

Query: 238 CGRHFTGFELNPDYCELIRQR 258
            GR     EL+P Y ++I +R
Sbjct: 372 SGRLARLIELDPKYVDVIVRR 392


>gi|152981982|ref|YP_001354447.1| DNA modification methylase
           [Janthinobacterium sp. Marseille]
          Length = 411

 Score = 74.3 bits (181), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 181 DVWSVSRLHREHKERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARRCGR 240
           DVW++ +  +       HPT KP+E+VER ++ S  PG VVLDPF GSGTT +AA + GR
Sbjct: 317 DVWAIKKPQKNDL----HPTMKPVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGR 372

Query: 241 HFTGFELNPDYCELIRQR 258
                EL+P Y ++I +R
Sbjct: 373 VARLIELDPKYVDVIVRR 390


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 742,181
Number of extensions: 32394
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 3
Length of query: 277
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 195
Effective length of database: 917,867
Effective search space: 178984065
Effective search space used: 178984065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)