BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3959.p (368 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980149|ref|YP_001354362.1| histidinol-phosphate aminotrans... 149 2e-37 gi|152980510|ref|YP_001353641.1| histidinol-phosphate aminotrans... 114 8e-27 gi|152981206|ref|YP_001352388.1| GntR family transcriptional reg... 59 4e-10 >gi|152980149|ref|YP_001354362.1| histidinol-phosphate aminotransferase [Janthinobacterium sp. Marseille] Length = 368 Score = 149 bits (377), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 115/343 (33%), Positives = 189/343 (55%), Gaps = 19/343 (5%) Query: 33 AGLVKLDAMENPYVLPVALREELAQRLAALELNRYPVPSYTQLKAAICECLGVPAGYEVL 92 A +VKL + ENP +P + + A A + RYP + +LKAA+ GVPA + + Sbjct: 34 AKIVKLASNENPLGMPESA--KQAMAAAIADAGRYPDGNGFELKAALTAKYGVPAEW-IT 90 Query: 93 LGNGSDELITMLSVACAMPGRTIVAPEPGFVMYGISAQMAGLDYVGVPLRADLSLDLPAM 152 LGNGS++++ + + A PG++++ + F +Y ++AQ G + + + D DL AM Sbjct: 91 LGNGSNDILELSAHAFVQPGQSVIYAQYSFAVYPLAAQAVGARSLVIAAK-DFGHDLDAM 149 Query: 153 LAAIETHKPVITWLGYPNNPTGTLYEMADVLRIIEAAAPYGLVVVDEAYQPF----ATST 208 AIE +I ++ PNNPTGT + ++ P +VV+DEAY F Sbjct: 150 ADAIEADTRLI-FVANPNNPTGTFIPGEQIESFLKRVPPEVVVVLDEAYTEFLAPEQQYD 208 Query: 209 LMPALPRHNNLVVMRTVSKL-GLAGVRLGYLSAAPALLRELDKVRPPYNVNVLTEAAVLF 267 + + ++ NL+V R++SK+ GLAG+R+GY A + L+++R P+NVN L +AA + Sbjct: 209 SIAWVAKYPNLLVSRSMSKVYGLAGLRIGYGIAQAGITDLLNRIRQPFNVNSLAQAAAIA 268 Query: 268 VLDHLHVLESQAARLRA-ARSDLASALAALDGVQVFPSAANFILIRVPDAD----KVFAG 322 L+ H ++A+L A L A AL ++ PS+ NF++++V D D ++ Sbjct: 269 ALND-HAFVQKSAQLNATGYRQLTQAFDALK-LRYLPSSGNFVMVKVGDDDGAGARINLA 326 Query: 323 LLARKVLVKNAGRMHMLLQNCLRITVSSDEENAIFLTALTAAL 365 LL + V+V+ G L LRI++ +EENA+F+ AL AL Sbjct: 327 LLKQGVIVRPVGNYG--LPQWLRISIGLEEENAVFIAALKKAL 367 >gi|152980510|ref|YP_001353641.1| histidinol-phosphate aminotransferase [Janthinobacterium sp. Marseille] Length = 355 Score = 114 bits (286), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 99/356 (27%), Positives = 169/356 (47%), Gaps = 22/356 (6%) Query: 13 VANVIRPVVRGWHSYHVPSAAGLVKLDAMENPYVLPVALREELAQRLAALELNRYPVPSY 72 + + P V G P GL+KL+ ENPY A+ + + A L YP P Sbjct: 8 IVQTLTPYVPGEQ----PKLPGLIKLNTNENPYPPSPAVMSAM-HAVTAETLRLYPDPDS 62 Query: 73 TQLKAAICECLGVPAGYEVLLGNGSDELITMLSVACAMPGRTIVAPEPGFVMYGISAQMA 132 + LK + + + A E+ +GNGSDE++ + +A ++ P+ + Y + ++ Sbjct: 63 SALKQTLADYHQL-ATNEIFIGNGSDEVLAFVFMALLKHQAPLLFPDITYSFYPVYCKLF 121 Query: 133 GLDYVGVPLRADLSLDLPAMLAAIETHKPVITWLGYPNNPTGTLYEMADVLRIIEAAAPY 192 G+DY +PL + + L A ++ +I PN PTG +A + ++ P Sbjct: 122 GIDYQEIPLDEQMGIRLADYHA--QSCGGII--FPNPNAPTGIALPLAKIEELL-IKQPN 176 Query: 193 GLVVVDEAYQPFATSTLMPALPRHNNLVVMRTVSK-LGLAGVRLGYLSAAPALLRELDKV 251 +V +DEAY F T +P + ++ NL+V+RT SK LAG+R+G+ P L+ L++V Sbjct: 177 VVVAIDEAYVDFGGETAIPLIRKYPNLLVIRTFSKSRSLAGLRVGFAMGHPKLIEALERV 236 Query: 252 RPPYNVNVLTE----AAVLFVLDHLHVLESQAARLRAARSDLASALAALDGVQVFPSAAN 307 + +N L AV D + +++ A + +R + L L G V PS AN Sbjct: 237 KNSFNSYPLDRMALTGAVASYGDEAYFQQTRQAIID-SREHMTQELEKL-GFSVLPSTAN 294 Query: 308 FILIRVPD--ADKVFAGLLARKVLVKNAGRMHMLLQNCLRITVSSDEENAIFLTAL 361 FI R A ++ GL R ++V++ H + LRI++ + +E + L Sbjct: 295 FIFARHASLPAGQLATGLRERAIIVRHFN--HPRINQYLRISIGNPDECKALIQTL 348 >gi|152981206|ref|YP_001352388.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 488 Score = 59.3 bits (142), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 124/288 (43%), Gaps = 53/288 (18%) Query: 11 DLVANVIRPVVRG----WHSYHVPSAAGLVKLDAMENPYVLPVALREELAQRLAALELNR 66 DLVAN +R V R Y +P LP LR++L ++A LE++ Sbjct: 147 DLVANALRAVSRQNPNLLLQYGIPQG-------------FLP--LRQQLQLKMAELEISA 191 Query: 67 YPVPSYTQLKAAICECLGVPAGYEVLLGNGSDELITMLSVACAMPGRTIVAPEPG-FVMY 125 P T A + + L + A + + PG TI +PG F+M+ Sbjct: 192 TPDQFVT--TAGVTQGLDLVARHYI------------------QPGDTIFVDDPGWFLMF 231 Query: 126 GISAQMAGLDYVGVPLRADLSLDLPAMLAAIETHKPVITWLGYP-NNPTGTLYEMADVLR 184 G A + G VG+P D D+ + A E H+P + + +NPT T A + Sbjct: 232 GSFAAL-GAKVVGIPRLPD-GPDIAQLTALAELHRPKLFIINSILHNPTSTSLSAAKAFQ 289 Query: 185 IIEAAAPYGLVVV-DEAY---QPFAT---STLMPALPRHNNLVVMRTVSKLGLAGVRLGY 237 +++ A Y ++V D+ Y P A +T + AL + N ++ + SK A +R+G+ Sbjct: 290 VLKIAEQYDFMIVEDDIYCDMHPGAAVQAATRIAALDQLNRVIYLGGFSKTLAANLRVGF 349 Query: 238 LSAAPALLREL--DKVRPPYNVNVLTEAAVLFVLDHLHVLESQAARLR 283 ++ +P + R+L K+ +TE V +L H RLR Sbjct: 350 IATSPEIARQLADRKMLTALTTTEITERVVYRILSEGH-YRKHTDRLR 396 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 795,257 Number of extensions: 31312 Number of successful extensions: 131 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 3 Length of query: 368 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 283 Effective length of database: 906,776 Effective search space: 256617608 Effective search space used: 256617608 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)