BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3957.p
         (212 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980372|ref|YP_001354975.1| imidazole glycerol phosphate sy...   354   2e-99
gi|152983113|ref|YP_001353961.1| glutamine amidotransferase [Jan...   142   1e-35

>gi|152980372|ref|YP_001354975.1| imidazole glycerol phosphate
           synthase subunit HisH [Janthinobacterium sp. Marseille]
          Length = 212

 Score =  354 bits (908), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 161/212 (75%), Positives = 189/212 (89%)

Query: 1   MNKIVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSL 60
           MNKIVVVDYG+GNLRSVAQALR VAPEADVRISGE+ DI  ADR+VLPGQGA+PDCMRSL
Sbjct: 1   MNKIVVVDYGVGNLRSVAQALRKVAPEADVRISGELNDIHTADRLVLPGQGAIPDCMRSL 60

Query: 61  RESGVEDAVIEASRTKPLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRFELEGLRQDDG 120
           +ESG+++A+++A+R KPLFGVCVGEQ++FDWSEEGDT GLGL PGKV++F L+   Q+DG
Sbjct: 61  QESGLQEALLDAARNKPLFGVCVGEQLMFDWSEEGDTAGLGLFPGKVIKFRLDQQLQEDG 120

Query: 121 SLFKVPQMGWNHVHQTRTHPLWEGIADDAFFYFVHSYYAVPAETAHVVGQTPYGRDFACA 180
           S FKVPQMGWN V Q ++HPLW+ IADD++FYFVHSYYAVPA  AH+VG+TPYG  F  A
Sbjct: 121 SRFKVPQMGWNRVRQAQSHPLWDQIADDSYFYFVHSYYAVPANIAHMVGETPYGAPFCSA 180

Query: 181 VARDNIFATQFHPEKSASAGLQLYRNFVHWKP 212
           +ARDNIFATQFHPEKSA+AGLQLY+NFVHW P
Sbjct: 181 IARDNIFATQFHPEKSATAGLQLYKNFVHWNP 212


>gi|152983113|ref|YP_001353961.1| glutamine amidotransferase
           [Janthinobacterium sp. Marseille]
          Length = 205

 Score =  142 bits (359), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 114/207 (55%), Gaps = 8/207 (3%)

Query: 3   KIVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSLRE 62
           ++ +VD G+GN+ +VA  L          ++   A+++   +V+LPG G+    +  L  
Sbjct: 4   RVAIVDLGLGNIGAVANMLLRAGGVP--CLTSNPAELQQYSKVMLPGVGSFDTAVTKLDN 61

Query: 63  SGVEDAVIE-ASRTKPLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRFELEGLRQDDGS 121
           +G  DA+ +       L G+C+G Q+L D SEEG  PGLG +PG V RF       D GS
Sbjct: 62  AGFRDALRQYVDGGGYLLGICLGMQLLADSSEEGVKPGLGFIPGIVKRFSF-----DAGS 116

Query: 122 LFKVPQMGWNHVHQTRTHPLWEGIADDAFFYFVHSYYAVPAETAHVVGQTPYGRDFACAV 181
             K+P MGWN +   + HPL   +   + FYFVHSY+    +    + +T YG +F+  V
Sbjct: 117 NLKIPHMGWNQIECAKAHPLVSELDQLSRFYFVHSYHFSCLDKNDELLRTQYGYEFSSGV 176

Query: 182 ARDNIFATQFHPEKSASAGLQLYRNFV 208
            R+N+   QFHPEKS   G+QL +NFV
Sbjct: 177 QRNNVMGVQFHPEKSHRYGMQLIKNFV 203


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 546,680
Number of extensions: 22954
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 133
Effective length of database: 928,958
Effective search space: 123551414
Effective search space used: 123551414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)