BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3956.p
         (265 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980293|ref|YP_001354974.1| phosphoribosylformimino-5-amino...   474   e-135
gi|152980611|ref|YP_001354973.1| imidazole glycerol phosphate sy...    94   8e-21
gi|152983112|ref|YP_001353960.1| imidazoleglycerol phosphate syn...    59   4e-10

>gi|152980293|ref|YP_001354974.1|
           phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase [Janthinobacterium sp. Marseille]
          Length = 261

 Score =  474 bits (1219), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/255 (89%), Positives = 243/255 (95%)

Query: 1   MLLIPAIDLKDGHCVRLKQGDMEQATVFSEDPAEMALHWLKQGARRLHLVDLNGAFAGKP 60
           MLLIPAIDLKDGHCVRLKQGDM+QATVFSEDPAEMA HWL QGARRLHLVDLNGAFAGKP
Sbjct: 1   MLLIPAIDLKDGHCVRLKQGDMDQATVFSEDPAEMARHWLLQGARRLHLVDLNGAFAGKP 60

Query: 61  KNEAAVKSILQVVARFAEENEVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNP 120
           KNE+AVKSILQ V  +AE+N +EEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNP
Sbjct: 61  KNESAVKSILQAVREYAEKNGIEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNP 120

Query: 121 GFLHDACSAFPGQIIVGLDAKDGKVATDGWSKLSGHEVVDLAQKFEGYGCEAIVYTDIGR 180
           GFLHDACSAFPGQIIVGLDAKDGKVATDGWSKLSGHEV+DLA+KFE YGCE+I+YTDIGR
Sbjct: 121 GFLHDACSAFPGQIIVGLDAKDGKVATDGWSKLSGHEVIDLAKKFEDYGCESIIYTDIGR 180

Query: 181 DGMMGGVNIEATVRLAQAVTIPIIASGGVHNVGDVEALCRVEDEGIEAVICGRSIYEGTL 240
           DGMMGGVNIEATV+LAQ++TIP+IASGGVHN+ DVEALC V+DEGIE VICGRSIYEGTL
Sbjct: 181 DGMMGGVNIEATVKLAQSMTIPVIASGGVHNIKDVEALCAVQDEGIEGVICGRSIYEGTL 240

Query: 241 DLRSGQDRADELTRE 255
           DLRS QDRADELT E
Sbjct: 241 DLRSAQDRADELTDE 255


>gi|152980611|ref|YP_001354973.1| imidazole glycerol phosphate
           synthase subunit HisF [Janthinobacterium sp. Marseille]
          Length = 254

 Score = 94.0 bits (232), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 117/220 (53%), Gaps = 21/220 (9%)

Query: 3   LIPAIDLKDGHCVR-LKQGDMEQATVFSEDPAEMALHWLKQGARRLHLVDLNGAFAGKPK 61
           +IP +D+  G  V+ +   ++  A     DP E+A  + +QGA  +  +D+     G+  
Sbjct: 7   IIPCLDVTAGRVVKGVNFLELRDAG----DPIEIARRYDEQGADEITFLDITATSDGR-- 60

Query: 62  NEAAVKSILQVVARFAEENEVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNPG 121
                  IL ++   A +     IP+ +GGG+R +D + R L+ G   + I ++A+ NP 
Sbjct: 61  -----DLILDIIEAVASQ---VFIPLTVGGGVRAVDDVRRLLNAGADKVGINSSAISNPQ 112

Query: 122 FLHDACSAFPGQ-IIVGLDAK---DGK--VATDGWSKLSGHEVVDLAQKFEGYGCEAIVY 175
            + DA   +  Q I+V +DAK   DG+  V T G  K +G + V+ A+K +  G   I+ 
Sbjct: 113 LVFDASQKYGSQCIVVAIDAKKASDGRWEVFTHGGRKATGLDAVEWAKKMQNLGAGEILL 172

Query: 176 TDIGRDGMMGGVNIEATVRLAQAVTIPIIASGGVHNVGDV 215
           T + RDG   G +++ T  ++ A++IP+IASGGV  + D+
Sbjct: 173 TSMDRDGTKIGFDLDLTRSVSDAISIPVIASGGVGGLQDL 212


>gi|152983112|ref|YP_001353960.1| imidazoleglycerol phosphate
           synthase [Janthinobacterium sp. Marseille]
          Length = 253

 Score = 58.5 bits (140), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 8/154 (5%)

Query: 85  IPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNPGFLHDACSAFPGQ-IIVGLDAKDG 143
           +P+  GGG+ +L  + R    G+  I +  AA+ NP  + +A + F  Q I+V LD K  
Sbjct: 75  MPICYGGGVDNLVDMRRLYHLGIEKISLSAAAITNPELVREAAAEFGNQAIVVTLDVKKN 134

Query: 144 -----KVATDGWSKLSGHEVVDLAQKFEGYGCEAIVYTDIGRDGMMGGVNIEATVRLAQA 198
                 V T      +    V++A++ E  G   I+   I +DG   G +++    + +A
Sbjct: 135 LFGKHTVRTHQGKTDTKRSPVEVAREMEQAGAGEILLYSIDKDGTWSGFDLDLIQNVTRA 194

Query: 199 VTIPIIASGGVHNVGDVEALCRVEDEGIEAVICG 232
           V IP+IA GG   +  + +   V + G  AV  G
Sbjct: 195 VGIPVIACGGAGELAHLRS--AVNEAGASAVAIG 226


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 648,801
Number of extensions: 28156
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 3
Length of query: 265
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 183
Effective length of database: 917,867
Effective search space: 167969661
Effective search space used: 167969661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)