BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3955.p
         (254 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980611|ref|YP_001354973.1| imidazole glycerol phosphate sy...   461   e-131
gi|152983112|ref|YP_001353960.1| imidazoleglycerol phosphate syn...   195   3e-51
gi|152980293|ref|YP_001354974.1| phosphoribosylformimino-5-amino...    99   2e-22

>gi|152980611|ref|YP_001354973.1| imidazole glycerol phosphate
           synthase subunit HisF [Janthinobacterium sp. Marseille]
          Length = 254

 Score =  461 bits (1185), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/253 (88%), Positives = 241/253 (95%)

Query: 1   MALAKRIIPCLDVTAGRVVKGVNFLELRDAGDPVEIARRYDEQGADELTFLDITASSDGR 60
           M LAKRIIPCLDVTAGRVVKGVNFLELRDAGDP+EIARRYDEQGADE+TFLDITA+SDGR
Sbjct: 1   MTLAKRIIPCLDVTAGRVVKGVNFLELRDAGDPIEIARRYDEQGADEITFLDITATSDGR 60

Query: 61  DLILDIIEAVASQVFIPLTVGGGVRAVEDVRRLLNAGADKVGINTSAVTNPQLVADAANK 120
           DLILDIIEAVASQVFIPLTVGGGVRAV+DVRRLLNAGADKVGIN+SA++NPQLV DA+ K
Sbjct: 61  DLILDIIEAVASQVFIPLTVGGGVRAVDDVRRLLNAGADKVGINSSAISNPQLVFDASQK 120

Query: 121 YGSQCIVVAIDAKRAGDGKWEVYTHGGRNATGLDAVEWARKMAQLGAGEILLTSMDRDGT 180
           YGSQCIVVAIDAK+A DG+WEV+THGGR ATGLDAVEWA+KM  LGAGEILLTSMDRDGT
Sbjct: 121 YGSQCIVVAIDAKKASDGRWEVFTHGGRKATGLDAVEWAKKMQNLGAGEILLTSMDRDGT 180

Query: 181 KSGFDLDLTRAVSEAVSIPVIASGGVGGLQDLADGITKGKADAVLAASIFHYGQHTVQEA 240
           K GFDLDLTR+VS+A+SIPVIASGGVGGLQDLADG+  G+ADAVLAASIFHYGQHTVQEA
Sbjct: 181 KIGFDLDLTRSVSDAISIPVIASGGVGGLQDLADGVKVGRADAVLAASIFHYGQHTVQEA 240

Query: 241 KRFMADQNISMRL 253
           KRFMADQ I MRL
Sbjct: 241 KRFMADQGIPMRL 253


>gi|152983112|ref|YP_001353960.1| imidazoleglycerol phosphate
           synthase [Janthinobacterium sp. Marseille]
          Length = 253

 Score =  195 bits (495), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/227 (44%), Positives = 147/227 (64%)

Query: 3   LAKRIIPCLDVTAGRVVKGVNFLELRDAGDPVEIARRYDEQGADELTFLDITASSDGRDL 62
           LA R++PCL +  G +VK V F +    GDPV   R ++++  DEL  +DITA+++ R +
Sbjct: 2   LAIRVMPCLLMDQGALVKTVQFKKPTYIGDPVNAVRIFNQKEVDELLLIDITATTEKRGI 61

Query: 63  ILDIIEAVASQVFIPLTVGGGVRAVEDVRRLLNAGADKVGINTSAVTNPQLVADAANKYG 122
             + +E + ++ F+P+  GGGV  + D+RRL + G +K+ ++ +A+TNP+LV +AA ++G
Sbjct: 62  DFETLEKLVTECFMPICYGGGVDNLVDMRRLYHLGIEKISLSAAAITNPELVREAAAEFG 121

Query: 123 SQCIVVAIDAKRAGDGKWEVYTHGGRNATGLDAVEWARKMAQLGAGEILLTSMDRDGTKS 182
           +Q IVV +D K+   GK  V TH G+  T    VE AR+M Q GAGEILL S+D+DGT S
Sbjct: 122 NQAIVVTLDVKKNLFGKHTVRTHQGKTDTKRSPVEVAREMEQAGAGEILLYSIDKDGTWS 181

Query: 183 GFDLDLTRAVSEAVSIPVIASGGVGGLQDLADGITKGKADAVLAASI 229
           GFDLDL + V+ AV IPVIA GG G L  L   + +  A AV   S+
Sbjct: 182 GFDLDLIQNVTRAVGIPVIACGGAGELAHLRSAVNEAGASAVAIGSM 228


>gi|152980293|ref|YP_001354974.1|
           phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase [Janthinobacterium sp. Marseille]
          Length = 261

 Score = 99.4 bits (246), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 29/224 (12%)

Query: 7   IIPCLDVTAGRVVK--------GVNFLELRDAGDPVEIARRYDEQGADELTFLDITASSD 58
           +IP +D+  G  V+           F E     DP E+AR +  QGA  L  +D+  +  
Sbjct: 3   LIPAIDLKDGHCVRLKQGDMDQATVFSE-----DPAEMARHWLLQGARRLHLVDLNGAFA 57

Query: 59  GR----DLILDIIEAVASQVF------IPLTVGGGVRAVEDVRRLLNAGADKVGINTSAV 108
           G+      +  I++AV           IP+ +GGG+R ++ + R L+ G   + I T+AV
Sbjct: 58  GKPKNESAVKSILQAVREYAEKNGIEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAV 117

Query: 109 TNPQLVADAANKYGSQCIVVAIDAKRAGDGKWEVYTHGGRNATGLDAVEWARKMAQLGAG 168
            NP  + DA + +  Q I+V +DAK   DGK  V T G    +G + ++ A+K    G  
Sbjct: 118 KNPGFLHDACSAFPGQ-IIVGLDAK---DGK--VATDGWSKLSGHEVIDLAKKFEDYGCE 171

Query: 169 EILLTSMDRDGTKSGFDLDLTRAVSEAVSIPVIASGGVGGLQDL 212
            I+ T + RDG   G +++ T  ++++++IPVIASGGV  ++D+
Sbjct: 172 SIIYTDIGRDGMMGGVNIEATVKLAQSMTIPVIASGGVHNIKDV 215


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 599,936
Number of extensions: 26237
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 3
Length of query: 254
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 173
Effective length of database: 921,564
Effective search space: 159430572
Effective search space used: 159430572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)