BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3949.p
         (257 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980005|ref|YP_001354967.1| TatC sec-independent protein tr...   379   e-106

>gi|152980005|ref|YP_001354967.1| TatC sec-independent protein
           translocase protein [Janthinobacterium sp. Marseille]
          Length = 248

 Score =  379 bits (973), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/246 (78%), Positives = 222/246 (90%)

Query: 6   TQAEDTFISHLIELRSRIVKAAAVVLVVFLCLMPFAAHIFDVLAAPMIHALPAGSKMIAT 65
           T  ED+FISHLIELRSR++KA+ VV+V+FLCLMP+A  I+DVLA PM+ ALP GSKMIAT
Sbjct: 2   TGNEDSFISHLIELRSRLMKASIVVIVIFLCLMPWAGDIYDVLARPMMLALPEGSKMIAT 61

Query: 66  GVITPFLIPIKVTMLVAVLISLPWVLYQLWAFVAPGLYAHEKRLIAPLVISSSVLFVTGV 125
           GVITPFLIP+KVTMLVA LISLPWVLYQLWAF+APGLY HEK+LIAPLV+SSS LFV GV
Sbjct: 62  GVITPFLIPVKVTMLVAFLISLPWVLYQLWAFIAPGLYTHEKKLIAPLVVSSSALFVIGV 121

Query: 126 AFCYFFVFGVVFPFINNFAPKSVSVAPDIDSYVDFVLTMFVAFGVTFEVPVIVIVLVRMG 185
           AFCYFFVFGV+F FINNFAPKS+SVAPDIDSY  FV+TMF+AFG+TFEVPVIVIVLVRMG
Sbjct: 122 AFCYFFVFGVIFHFINNFAPKSISVAPDIDSYFGFVMTMFIAFGLTFEVPVIVIVLVRMG 181

Query: 186 LVPLAKLKQIRPYVIVGAFIVAAVVTPPDVMSQLMLAVPLVLLYEIGLLVAPIFERATRA 245
           LV + KLKQIRPYVIVGAF++AA+VTPPDVMSQL+LAVPL LLYE+GLL+AP+F + T+A
Sbjct: 182 LVSVEKLKQIRPYVIVGAFVIAAIVTPPDVMSQLLLAVPLCLLYEVGLLLAPLFVKITQA 241

Query: 246 PDAEPS 251
           P    S
Sbjct: 242 PKESES 247


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.330    0.142    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 499,345
Number of extensions: 18501
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 176
Effective length of database: 921,564
Effective search space: 162195264
Effective search space used: 162195264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)