BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3947.p (393 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981007|ref|YP_001354965.1| htra-like serine protease signa... 565 e-162 gi|152981037|ref|YP_001353055.1| periplasmic serine protease [Ja... 242 3e-65 gi|152980821|ref|YP_001354055.1| periplasmic serine protease [Ja... 216 2e-57 >gi|152981007|ref|YP_001354965.1| htra-like serine protease signal peptide protein [Janthinobacterium sp. Marseille] Length = 391 Score = 565 bits (1455), Expect = e-162, Method: Compositional matrix adjust. Identities = 289/388 (74%), Positives = 324/388 (83%), Gaps = 5/388 (1%) Query: 1 MRRLWLLFAQTVTVGLALWFIVATLKPDWLSGSFTSRARPAQST-VQMQEAAPN-APALD 58 MRRLWLLFAQTVTVGLA+ FIV TLKP+W SG + ST V M EA PN AP Sbjct: 1 MRRLWLLFAQTVTVGLAILFIVTTLKPEWASGVLGGAQKVRSSTSVSMLEAPPNTAPTEG 60 Query: 59 SYRHAARQAMPSVVNIFTTTEARPQKSPFQNDPFFRKFFGDQFDEQQQDDKQSSLGSGVI 118 S+R AA+ AMPSVVNIFT+ P ++PF +DPFFRKFFGD+FDEQQ+ KQ SLGSGVI Sbjct: 61 SFRDAAKLAMPSVVNIFTSKTPSPSQNPFMDDPFFRKFFGDRFDEQQE--KQVSLGSGVI 118 Query: 119 VSPQGYILTNNHVVEAADKIEVALADGRKASAKVVGIDPETDLAVIKIDLPNLPAITLGH 178 VS +GYILTNNHVVEAAD+IEVAL DGRKA AKVVG DPETDLAVIKI+L NLPAITLG Sbjct: 119 VSAEGYILTNNHVVEAADEIEVALTDGRKAIAKVVGSDPETDLAVIKINLDNLPAITLGR 178 Query: 179 PENSSVGDVVLAIGNPFGVGQTVTMGIVSALGRNHLGI-NTFENFIQTDAAINPGNSGGA 237 E + VGDVVLAIGNPFGVGQTVTMGI+SALGRNHLGI + FENFIQTDAAINPGNSGGA Sbjct: 179 VEEARVGDVVLAIGNPFGVGQTVTMGIISALGRNHLGILDAFENFIQTDAAINPGNSGGA 238 Query: 238 LVDTNGNLLGINTAIYSRTGGNLGIGFAIPMSTAKTVMEAIINHGQVVRGWIGVEPQDIT 297 L+D NGNLLGINTAIYSR+GG+LGIGFAIP++T K+VM+AII +G VVRG+IGVEPQDIT Sbjct: 239 LIDANGNLLGINTAIYSRSGGSLGIGFAIPVTTVKSVMDAIIKNGHVVRGYIGVEPQDIT 298 Query: 298 PELAESFGLGKKTGAIIAGVLKGGPADRAGMRPGDILVSIADKPVADTTEMLNVIAQLTP 357 PELAESFGL K TGAIIAGVLKGGPAD+AGM+PGDILVS+ K V D +MLN IAQL+P Sbjct: 299 PELAESFGLKKSTGAIIAGVLKGGPADKAGMQPGDILVSVEGKAVTDMADMLNQIAQLSP 358 Query: 358 GQEIAMTVLRKSQETKLNITVGKRPPPP 385 G + + VLR++QE LNITVG RP P Sbjct: 359 GTKAKVVVLRRNQENTLNITVGMRPKAP 386 >gi|152981037|ref|YP_001353055.1| periplasmic serine protease [Janthinobacterium sp. Marseille] Length = 493 Score = 242 bits (617), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 136/359 (37%), Positives = 206/359 (57%), Gaps = 23/359 (6%) Query: 40 PAQSTVQMQEAAPNAPALDSYRHAARQAMPSVVNIFTTTEARPQKSPFQND-----PFFR 94 PA + V AAP+ L + + P+VVNI TT +A+ Q+ D FFR Sbjct: 25 PAVAGVAPSIAAPSVAGLPDFTDLVEKTGPAVVNIRTTEKAKVQQGNAATDDEEMQEFFR 84 Query: 95 KFFGDQFDEQQQ---------------DDKQSSLGSGVIVSPQGYILTNNHVVEAADKIE 139 +FFG +QQ ++ +GSG I+S GY++TN HVV AD++ Sbjct: 85 RFFGAPIPPRQQQPAPRGRGKAGPDAEEEVPRGVGSGFIISADGYVMTNAHVVNGADEVY 144 Query: 140 VALADGRKASAKVVGIDPETDLAVIKIDLPNLPAITLGHPENSSVGDVVLAIGNPFGVGQ 199 V L D R+ AK++G D TD+A++KI+ NLP +T+G VG+ V+AIG+PFG+ Sbjct: 145 VTLTDKREYKAKIIGADTRTDVALVKIEGSNLPRLTMGDSNKIRVGEWVIAIGSPFGLDN 204 Query: 200 TVTMGIVSALGRNHLGINTFENFIQTDAAINPGNSGGALVDTNGNLLGINTAIYSRTGGN 259 +VT GIVSA R+ + IQTD A+NPGNSGG L++ G ++GIN+ IYSR+GG Sbjct: 205 SVTAGIVSAKARDT---GDYLPLIQTDVAVNPGNSGGPLINMRGEVIGINSQIYSRSGGY 261 Query: 260 LGIGFAIPMSTAKTVMEAIINHGQVVRGWIGVEPQDITPELAESFGLGKKTGAIIAGVLK 319 +GI FA+P+ A V + + G+V RG +GV+ ++T ++AES GL + GA++ V Sbjct: 262 MGISFAVPIDEAMRVSDQLRATGKVTRGRVGVQIGEVTKDVAESLGLSRPQGALVQRVEP 321 Query: 320 GGPADRAGMRPGDILVSIADKPVADTTEMLNVIAQLTPGQEIAMTVLRKSQETKLNITV 378 GGPA++ G+ GD+++ + ++++ ++ PG MTV RK LN+ V Sbjct: 322 GGPAEKGGVEAGDVILKFNGVGIERSSDLPRLVGSTKPGTRSVMTVWRKGAMRDLNLVV 380 >gi|152980821|ref|YP_001354055.1| periplasmic serine protease [Janthinobacterium sp. Marseille] Length = 453 Score = 216 bits (550), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 125/319 (39%), Positives = 183/319 (57%), Gaps = 20/319 (6%) Query: 60 YRHAARQAMPSVVNI-FTTTEARPQKSPFQNDPFFRKFFGDQFDEQQQDDKQSSLGSGVI 118 + AR P+VVNI +A+ +SP Q ++++SLGSG I Sbjct: 42 FSALARTYGPAVVNIGVARDQAQRLRSP------------------QNANEEASLGSGFI 83 Query: 119 VSPQGYILTNNHVVEAADKIEVALADGRKASAKVVGIDPETDLAVIKIDLPNLPAITLGH 178 VS GYILTN HVV +I V L D R+ A+++G D D+A++KID LP + +G+ Sbjct: 84 VSTDGYILTNAHVVARGTQISVKLPDRREFKARLIGSDAVADVALLKIDAQGLPTVRIGN 143 Query: 179 PENSSVGDVVLAIGNPFGVGQTVTMGIVSALGRNHLGINTFENFIQTDAAINPGNSGGAL 238 P VGD LAIG+PFG + T GI+SA R G + + F+QTD +NPGNSGG L Sbjct: 144 PNKVEVGDWALAIGSPFGFSNSATAGIISATRRILPGAD-YIPFLQTDVPVNPGNSGGPL 202 Query: 239 VDTNGNLLGINTAIYSRTGGNLGIGFAIPMSTAKTVMEAIINHGQVVRGWIGVEPQDITP 298 + G ++GIN+ IYS +GG G+ FAIP+ A + E + + G V RG IGV Q+++ Sbjct: 203 FNQYGEVIGINSRIYSNSGGYQGLSFAIPIDAAMRIKEQLQDKGAVTRGRIGVSVQEVSQ 262 Query: 299 ELAESFGLGKKTGAIIAGVLKGGPADRAGMRPGDILVSIADKPVADTTEMLNVIAQLTPG 358 LAESF L + GA+++ V +G ADRAG++ GD+++ + V + + L IA PG Sbjct: 263 PLAESFHLPRPAGALVSYVERGAAADRAGLKSGDVILQVKGNEVLQSADALIFIADSAPG 322 Query: 359 QEIAMTVLRKSQETKLNIT 377 +E + V R+ + L + Sbjct: 323 EETVLKVWREKKALLLTVV 341 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 966,258 Number of extensions: 41871 Number of successful extensions: 202 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 3 Length of query: 393 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 308 Effective length of database: 906,776 Effective search space: 279287008 Effective search space used: 279287008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)