BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3943.p
         (468 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980315|ref|YP_001354960.1| cytochrome b [Janthinobacterium...   830   0.0  

>gi|152980315|ref|YP_001354960.1| cytochrome b [Janthinobacterium
           sp. Marseille]
          Length = 467

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/466 (86%), Positives = 436/466 (93%)

Query: 3   AFHEKKLPDDAPAAAKALNWIDARFPLTATWKAHLSEYYAPKNFNFWYIFGSLALLVLVI 62
           AFHEK+LP DAP A KALNW+DARFPL++TWKAHLSEYYAPKNFNF Y+FGSLALLVLVI
Sbjct: 2   AFHEKQLPADAPIADKALNWVDARFPLSSTWKAHLSEYYAPKNFNFLYVFGSLALLVLVI 61

Query: 63  QIVTGIFLVMHYKPDANLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMLRGLL 122
           QIVTGIFLVMHYKPDANLAFASVEYIMRDVPWGWLVRYMHSTGASAFF+VVY+HMLRGLL
Sbjct: 62  QIVTGIFLVMHYKPDANLAFASVEYIMRDVPWGWLVRYMHSTGASAFFVVVYIHMLRGLL 121

Query: 123 YGSYRKPRELVWLFGVGIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 182
           YGSYRKPRELVWLFGV IFLCLM EAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS
Sbjct: 122 YGSYRKPRELVWLFGVAIFLCLMAEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 181

Query: 183 LLIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVAAHIIALHEVGSNNPDGVEIKEKTDEN 242
           L IRGDYVVSDATLNRFF+FHVIAIPLVLIGLV AHI+ALHEVGS+NPDGVEIKEK DE 
Sbjct: 182 LWIRGDYVVSDATLNRFFAFHVIAIPLVLIGLVVAHIVALHEVGSSNPDGVEIKEKVDEK 241

Query: 243 GVPLDGVPFHPYYTVHDIFGVSIFLLVFSAVIFFAPEMGGYFLEYNNFIPADSLKTPLHI 302
           GVPLDG+PFHPYY+VHDIF V+IFL VF+AV+FFAPEMGGYFLEYNNFIPAD LKTP HI
Sbjct: 242 GVPLDGIPFHPYYSVHDIFIVTIFLFVFTAVVFFAPEMGGYFLEYNNFIPADPLKTPPHI 301

Query: 303 APVWYFTPFYSILRATTADFMGWLIAGVAAYVALLVFKSRLTAKLKMASIVIGLVIIAGM 362
           APVWYFTPFYSILRATT+DFM WL AGVAAYVAL++ K+RL +K K+A+ VIGL  IAGM
Sbjct: 302 APVWYFTPFYSILRATTSDFMIWLAAGVAAYVALIILKTRLASKFKIAAAVIGLAAIAGM 361

Query: 363 LVFDAKFWGVVLMGLSVVILGGLPWLDQSQVKSIRYRPSWHKYIYLVFGIAFVILGYLGV 422
            +FDAKFWGVVLMG+SV+I+ GLPWLD S VKSIRYRPSWHKY+Y+VFGIAFV+LGYLGV
Sbjct: 362 FIFDAKFWGVVLMGVSVMIMFGLPWLDVSPVKSIRYRPSWHKYVYIVFGIAFVVLGYLGV 421

Query: 423 QPPTAIGTTVSQVCSFIYLGFFLLMPWWSAAGTFKPVPERVVYHPH 468
           QPPTAIGT ++QV +F+Y GFFLLMPWWSA GTFKPVP+RVV+HPH
Sbjct: 422 QPPTAIGTAIAQVGTFVYFGFFLLMPWWSAMGTFKPVPDRVVFHPH 467


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.330    0.145    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,143,750
Number of extensions: 50338
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 381
Effective length of database: 899,382
Effective search space: 342664542
Effective search space used: 342664542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)