BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3941.p (203 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981689|ref|YP_001354958.1| stringent starvation protein A ... 400 e-113 gi|152980248|ref|YP_001352050.1| glutathione S-transferase [Jant... 62 3e-11 >gi|152981689|ref|YP_001354958.1| stringent starvation protein A [Janthinobacterium sp. Marseille] Length = 203 Score = 400 bits (1027), Expect = e-113, Method: Compositional matrix adjust. Identities = 190/203 (93%), Positives = 198/203 (97%) Query: 1 MMVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPEDISVMNPYGQVPILVERDLVL 60 MMVLYSGTTCPFSQRCRLVLFEKGMDFE+RDVDLFNKPEDIS MNPYGQVPILVERDL+L Sbjct: 1 MMVLYSGTTCPFSQRCRLVLFEKGMDFEVRDVDLFNKPEDISTMNPYGQVPILVERDLIL 60 Query: 61 YESNIINEYIDERFPHPQLMPADPLMRARARLMLFNFEKELFVHVHTLENEKSKAAEKNQ 120 YESNIINEYIDERFPHPQLMPADPLMRARARLMLFNFEKELF+HVHTLEN+K ++ EK Q Sbjct: 61 YESNIINEYIDERFPHPQLMPADPLMRARARLMLFNFEKELFIHVHTLENDKGRSGEKIQ 120 Query: 121 EKARHEIRDRLTQLAPLFLKNKYMLGDEFSMLDVALAPLLWRLDHYGIELSKTAAPLMKY 180 EKAR+EIRDRLT LAPLFLKNKYMLGDEFSMLDVA+APLLWRLDHYGIELSKTAAPLMKY Sbjct: 121 EKARNEIRDRLTTLAPLFLKNKYMLGDEFSMLDVAIAPLLWRLDHYGIELSKTAAPLMKY 180 Query: 181 AERIFSRPAYIEALTPSEKVMRR 203 AERIFSRPAYIEALTPSEKVMRR Sbjct: 181 AERIFSRPAYIEALTPSEKVMRR 203 >gi|152980248|ref|YP_001352050.1| glutathione S-transferase [Janthinobacterium sp. Marseille] Length = 203 Score = 61.6 bits (148), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 35/214 (16%) Query: 2 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPEDISVMNPYGQVPILVERD-LVL 60 M L P+ ++ R+V+ EK +D++ +++ I NP G+VP LV D + Sbjct: 1 MKLIGSLASPYVRKVRVVMLEKKIDYDFVLENVWGAETTIQESNPLGKVPCLVMEDGGAM 60 Query: 61 YESNIINEYIDERFPHPQLMPADPLMRARARLMLFNFEKELFVHV-------HTLE--NE 111 ++S +I EY+D P +L+P P R RA + + + HTL + Sbjct: 61 FDSRVIVEYLDTLTPVGKLIP--PNGRERAEVKCWEALADGVADAAMLLRLEHTLRPAEQ 118 Query: 112 KSKAAEKNQEKARHEIRDRLTQLAPLFLKNKYMLGDEFSMLDVALAPLL----------- 160 +S+A Q + H D L ++ + G+++++ DVA+ +L Sbjct: 119 RSQAWIDRQSRKVH---DGLKAMSVGLKDTAFCAGNQYTLADVAVGCVLEWLSFRFPEIT 175 Query: 161 WRLDHYGIELSKTAAPLMKYAERIFSRPAYIEAL 194 WR D+ +E K E++ RP++ E + Sbjct: 176 WRTDYPNLE---------KLLEKLSERPSFKETV 200 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 445,959 Number of extensions: 17271 Number of successful extensions: 49 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 51 Number of HSP's successfully gapped: 2 Length of query: 203 Length of database: 1,221,021 Length adjustment: 79 Effective length of query: 124 Effective length of database: 928,958 Effective search space: 115190792 Effective search space used: 115190792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)