BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3940.p
         (162 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981559|ref|YP_001354957.1| stringent starvation protein B ...   204   2e-54

>gi|152981559|ref|YP_001354957.1| stringent starvation protein B
           [Janthinobacterium sp. Marseille]
          Length = 167

 Score =  204 bits (519), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 114/170 (67%), Positives = 128/170 (75%), Gaps = 11/170 (6%)

Query: 1   MPEVSTKPYLLRAIYEWCTDNGYTPHIAVVVDSRTRVPMQFVKNGEIVLNISFEATSGLK 60
           M E STKPYLLRAIYEWCTDNGYTP++A VVD  TRVPM+FVKNGEIVLNISF ATSGLK
Sbjct: 1   MSETSTKPYLLRAIYEWCTDNGYTPYMAAVVDGATRVPMEFVKNGEIVLNISFSATSGLK 60

Query: 61  MENDNIHFSARFGGVSRDILIPVENVIAIYARENGQGMAFEA----PTPATAGEAEQAPE 116
           MEND I FSARFGGVSRDI +PV+NV+AIYARENGQGMAFEA     T     E E A  
Sbjct: 61  MENDLIRFSARFGGVSRDISVPVDNVVAIYARENGQGMAFEATNKDATEEAGDEVEDASV 120

Query: 117 QES----SAPVLSSVPLSEPEKKPAEGSDKGDDDPEPPKKGGRPVLTRIK 162
           +++    +AP L+SVP + P  K  +      D P+PPKKGGRP LTRIK
Sbjct: 121 EDTAPAHAAPALTSVP-TAPHDKNDDDGSD--DVPDPPKKGGRPTLTRIK 167


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.312    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 262,512
Number of extensions: 8417
Number of successful extensions: 18
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 86
Effective length of database: 940,049
Effective search space: 80844214
Effective search space used: 80844214
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)