BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3939.p (540 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982591|ref|YP_001355212.1| ABC-type transport system, peri... 99 6e-22 gi|152982644|ref|YP_001353091.1| ABC-type transport system, peri... 75 9e-15 >gi|152982591|ref|YP_001355212.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 522 Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 127/474 (26%), Positives = 198/474 (41%), Gaps = 64/474 (13%) Query: 57 AMAQTPKRGGKLRMATQTSSTADTLDPAKAAHATDYTRVNLFYNGLTKLDS--KLGPQMV 114 A+A P L++A S+ +LDP A + + ++ L +D+ KL P Sbjct: 17 ALAMQPLWAADLKIAL--SADVSSLDPHYLNIAPNVAFSSHIFDALVNVDANGKLVPG-- 72 Query: 115 LAEELLTTDAITWTVKLRKDVIFHDGKPFTPADVVYSLMR------HKDPAVASKVKVVA 168 LA DA TW KLR DV FHDG FT DVV+SL R P A +++A Sbjct: 73 LATSWRAVDATTWEFKLRHDVKFHDGSKFTAEDVVFSLDRPAKLTNSPGPYTAYTKQIIA 132 Query: 169 DQIESVKATGPNEVQIKLAGANADLPVILSTAQFLII------RDGTTEFRTPN---GTG 219 +I + ++L+ A P+ L + I+ + T +F + GTG Sbjct: 133 KKIV-------DPYTVRLSTATPYGPLALDVSAIFIVSKKAAEKASTEDFNSGKALIGTG 185 Query: 220 AFKCKEFTPGVRTIGVRNENYWKSGMPYLDEVEVFGIPDEAARVNALLSGDVHWINDVNA 279 +K F G R RNE YW G D+V I + A R+ ALLSGDV I V Sbjct: 186 PYKFVSFKRGDRIEVARNEQYW-GGKSDWDKVSFRIITNSAPRLAALLSGDVDAIEGVPT 244 Query: 280 RSTERVRTSAGYTV---IETRTGLY-TDLVIRQ-----DVA-------PGNSMDFTLGMK 323 +++ +A + + I RT + D R D A P + + Sbjct: 245 ADLSKLKGNAKFKLEQKISWRTIFWEIDQSERSSRYVTDKAGKPLPKNPLRDIRVRQAIS 304 Query: 324 YLMDREQIKNAAFRGYAVTANDQPIDPTNRFYFPGLPQRPYDPDKAKFHLQKAGVLGSTI 383 ++R+ + + G AV A++ + P Y L YDP+ AK L +AG + Sbjct: 305 KAINRQALVDRTMEGLAVPASNI-VAPGLLGYNDALKVEAYDPEGAKKLLAEAGYPNGFV 363 Query: 384 PLVASAAATGSVDIAVLMQQSAQ---KIGLKLDVKRVPPDGYWSN----QWMKVPLGFGN 436 L ++ A ++Q AQ +IG++ V+ +P Y+S ++ LG+G Sbjct: 364 -LTLHGPNDRYINDAQVVQTVAQFLNRIGIQTKVETLPLSVYFSKARAGEFSVALLGWGT 422 Query: 437 INPRPSADILFTQLFKSD------AQWNESGWKNAQFDQLLVAARGETDFNKRK 484 + + D L + WN + N D+L+ A+ G D KR+ Sbjct: 423 L----AGDFGLRTLVGTSNPDIGWGTWNWGKYSNPALDKLIAASLGSVDQAKRE 472 >gi|152982644|ref|YP_001353091.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 535 Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 126/512 (24%), Positives = 206/512 (40%), Gaps = 52/512 (10%) Query: 51 MAVSSSAMAQTPKRGGKLRMATQTSSTADTLDPAKAAHATDYTRVNLFYNGLTKLDSKLG 110 +A+ S A+T R G + MA +T P + A A +T + Y+ L ++ +G Sbjct: 18 LALHSGVHAETVARYG-ISMADIPLTTGQ---PDRGAGAYQFTG-HTIYDPLIAWEANIG 72 Query: 111 -------PQMVLAEELLTTDAITWTVKLRKDVIFHDGKPFTPADVVYSL---MRHKDPAV 160 P + ++ D W LRK V FHDG F VV++L + K P Sbjct: 73 TRPGKLIPGLATEWKVDPKDQKKWLFTLRKGVKFHDGSDFKADAVVWNLDKVLNDKSPQF 132 Query: 161 ASK----VKVVADQIESVKATGPNEVQIKLAGANADLP------VILSTAQFLII-RDGT 209 +K V+ I S + V+I +A P +I S AQ+ + RD Sbjct: 133 DAKQSAQVRPRIPSIVSYRKVNDYAVEITTKEIDALFPYQLPWFLISSPAQWEKVGRDWN 192 Query: 210 TEFRTPNGTGAFKCKEFTPGVRTIGVRNENYW-KSGMPYLDEVEVFGIPDEAARVNALLS 268 +GTG FK + P R V+N YW KS + D V + IPD R NALL+ Sbjct: 193 KFASQASGTGPFKLDKLVPRERAELVKNAGYWDKSRLAQTDRVILLPIPDALTRANALLN 252 Query: 269 GDVHWINDVNARSTERVRTSAGYTVIETRTGLYTDLVIRQDVAPGNSMDFTLGMKYLMDR 328 G V I ++++S V ++ Q +P + +DR Sbjct: 253 GQVDIIETPPPDVLPQLKSSGFKLVTNVTPHVWPYHFSTQPGSPWTDIRVRKAANLAVDR 312 Query: 329 EQIKNAAFRGYAVTANDQPIDPTNRFYFPGLPQRPYDPDKAKFHLQKAGVLGS---TIPL 385 I A G AV A Q +DPT+ ++ + YD A+ + +AG S + Sbjct: 313 SGIV-ALMNGLAVPAYGQ-LDPTSPWFGKPTFKIKYDLAAARALMAQAGYSPSKPLKAKI 370 Query: 386 VASAAATG---SVDIAVLMQQSAQKIGLKLDVKRVPPDGYWSNQWMK------------- 429 V + TG S+ + +QQS +IG+++ + V + + + W Sbjct: 371 VIAQGGTGQMLSLPMNEYIQQSLAEIGIQVQFEVVELETLYLH-WRSGAKGDINAGKGIT 429 Query: 430 -VPLGFGNINPRPSADILFTQLFKSDAQWNESGWKNAQFDQLLVAARGETDFNKRKQMYA 488 + LG+ +P + + + N GW N + D L R D + ++ A Sbjct: 430 AINLGYVTADPFYALTRFADSRYVAPNGVNWGGWSNPKVDAELDQIRTTFDVKAQDKLLA 489 Query: 489 DM-QTLVHEKCGIGIPVFIINLEGVNTKVKGI 519 + Q +V + + + V +N ++ KVKG Sbjct: 490 QVHQAMVDDALMLWV-VHDVNPHVISPKVKGF 520 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,263,442 Number of extensions: 52440 Number of successful extensions: 130 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 2 Length of query: 540 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 452 Effective length of database: 895,685 Effective search space: 404849620 Effective search space used: 404849620 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)