BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3937.p
         (323 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979956|ref|YP_001354806.1| threonine dehydratase [Janthino...   182   2e-47

>gi|152979956|ref|YP_001354806.1| threonine dehydratase
           [Janthinobacterium sp. Marseille]
          Length = 507

 Score =  182 bits (462), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/296 (32%), Positives = 168/296 (56%), Gaps = 7/296 (2%)

Query: 24  TPLLRAEKIEKQLGCELYLKPETLQITGAFKIRGALNKSLSLPKEAIANGIIATSSGNHA 83
           +PL  A  + +++G ++Y K E +Q   +FK+RGA NK   LP   +  G+I  S+GNHA
Sbjct: 21  SPLELAPTLSQRVGNQIYFKREDIQSVFSFKLRGAYNKMAHLPPAQMKRGVICASAGNHA 80

Query: 84  QGLAYAARMLGVKALLVLPVTTPKIKIANTQALGAEVILFDGDTAARWKRVAEIAEENHY 143
           QG+A +A  LG +A++V+P TTP +K+    A G EV+LF    +  ++    + ++   
Sbjct: 81  QGVALSATKLGCRAVIVMPTTTPSVKVEAVNARGGEVVLFGDSYSDAYQHALTLEKKLKL 140

Query: 144 VMVHAFEDPVVMAGQGTIGCEIIDDLPD-VDTVIIPIGGGGLISGIATALKETRPSIRVV 202
             VH F+DP V+AGQGTIG EI+      +  + +PIGGGGLI+G+A  +K  RP I+V+
Sbjct: 141 TFVHPFDDPDVIAGQGTIGMEILRQHAGPIHAIFVPIGGGGLIAGVAAYVKAVRPEIKVI 200

Query: 203 GAEPALTPKYYQSRINKQRTSLPLKNTIADGLRISVPGQNPYPIIEKYVDEIVLVEDEHI 262
           G + + +    +S    +R ++      ADG  + + G+  + + ++YVDEI++V+   +
Sbjct: 201 GVQTSDSDAMARSLQAGRRVTMADVGLFADGTAVKLVGEETFRLAKQYVDEIIVVDTNEV 260

Query: 263 IEGMRILAKDAKLIAEPAASIGIGALLA----GGLSVRP--DEKVCAVLTGGNWDL 312
              ++ + +D + I EP+ ++ +    A       S +P  +E +  + +G N + 
Sbjct: 261 CTAIKDVFQDTRSILEPSGALAVAGAKAYIERARASKKPLKNETLVTIASGANMNF 316


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 697,888
Number of extensions: 25774
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 240
Effective length of database: 914,170
Effective search space: 219400800
Effective search space used: 219400800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)