BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3936.p
         (736 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980060|ref|YP_001353540.1| hypothetical protein mma_1850 [...  1358   0.0  

>gi|152980060|ref|YP_001353540.1| hypothetical protein mma_1850
           [Janthinobacterium sp. Marseille]
          Length = 733

 Score = 1358 bits (3514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/733 (89%), Positives = 684/733 (93%)

Query: 1   MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCN 60
           MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYC 
Sbjct: 1   MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCV 60

Query: 61  TRNISTENIRLSQNNIVDPENRYQQTFKIQVELPADIEEADRRGILRSIERCTVKKVVQQ 120
           TR+I TENIRLSQNNIVDPENRYQQ FKIQVELP DI E DRRGILRSIERCTVKKVVQ 
Sbjct: 61  TRDIPTENIRLSQNNIVDPENRYQQIFKIQVELPPDILEVDRRGILRSIERCTVKKVVQA 120

Query: 121 GPEFVIEEVESLDADAQSLLTLKPEAGVSTHILGKDLPLEQTIANMSGLLAELGIKIEIA 180
           GPEFVIEEVESLDADAQSLLTLKP+A  ST+I GKDLPLEQTIANMSG+LA LGIKIEIA
Sbjct: 121 GPEFVIEEVESLDADAQSLLTLKPDADASTYIPGKDLPLEQTIANMSGVLANLGIKIEIA 180

Query: 181 SWRNIIPNVWSLHIRDAHSPMCFTNGKGATKESALASALGEYIERISNNHFYAGSYWGEE 240
           SWRNIIPNVWSLHIRDAHSPMCFTNGKGATKESALASALGEYIER+SNNHFYAGSYWGE+
Sbjct: 181 SWRNIIPNVWSLHIRDAHSPMCFTNGKGATKESALASALGEYIERLSNNHFYAGSYWGED 240

Query: 241 IAHAEFVHYPNERWFKPARADKLPKEILDAYCLEIYNADGELRASHLIDTNSGNAERGIC 300
           IA+AEFVHYPNERWFKP R D LP EILD YCLEIYN DGELR SHLIDTNSGN +RGIC
Sbjct: 241 IANAEFVHYPNERWFKPGRKDALPAEILDDYCLEIYNPDGELRGSHLIDTNSGNIQRGIC 300

Query: 301 ALPYVRQSDGEVVYFPSNLVENLFVSNGMSAGNTLPEAQVQCLSEIFERAVKREILEGEI 360
           +LPYVR SDGEVVYFPSNL+ENL+VSNGMSAGNTL EAQVQCLSEIFERAVKREILEGEI
Sbjct: 301 SLPYVRHSDGEVVYFPSNLIENLYVSNGMSAGNTLVEAQVQCLSEIFERAVKREILEGEI 360

Query: 361 CLPDVPQEVLAKYPGIVAGIQGLEEQGFPVLVKDASLGGVYPVMCVTLMNPRTGGVFASF 420
            LPDVPQEVLAKYPGI+AGI+GLEEQGFPVLVKDASLGG YPVMCVTLMNPRTGGVFASF
Sbjct: 361 ALPDVPQEVLAKYPGILAGIKGLEEQGFPVLVKDASLGGTYPVMCVTLMNPRTGGVFASF 420

Query: 421 GAHPSFEVALERSLTELLQGRSFEGLNDLPQPTFESNAVTEPNNFVEHFIDSSGIVSWRF 480
           GAHPSFEVALERSLTELLQGRSFEGLNDLP+PTF S AVTEP NFVEHFIDSSGIVSWRF
Sbjct: 421 GAHPSFEVALERSLTELLQGRSFEGLNDLPRPTFASEAVTEPYNFVEHFIDSSGIVSWRF 480

Query: 481 FSAKSDYEFVEWDFSSQGEDSNAEEAATLFGILEQMGKQAYVAVYDQLGATACRILVPGY 540
           FSAKSDYEFVEWDFS QGEDSNA+EAATLFGIL+ MGK+ Y AVYD LGATACRILVPGY
Sbjct: 481 FSAKSDYEFVEWDFSGQGEDSNADEAATLFGILKDMGKEVYTAVYDNLGATACRILVPGY 540

Query: 541 SEVYPVEDLIWDNTNKALLFREDILNLHRLDDEALAALLDRLENNELDEYSDIATLIGID 600
           SE+YPVEDLIWDNTNKALLFR D+LN+H+LDD +L ALLDRLENNELDEYSDIATLIGI+
Sbjct: 541 SEIYPVEDLIWDNTNKALLFRADVLNIHQLDDASLEALLDRLENNELDEYSDIATLIGIE 600

Query: 601 FDENTVWGQLTVLELKLLIHLALQQFEEAHELVGAFLQYNDNSVERGLFYQALNVVLEVE 660
           FDENT WGQLTVLELKLLI+LALQQF+ AHELVGAFLQYNDNS ERGLFYQALNVVLEV 
Sbjct: 601 FDENTDWGQLTVLELKLLINLALQQFDAAHELVGAFLQYNDNSAERGLFYQALNVVLEVV 660

Query: 661 LDDALELADYETNFRRMFGNERMDAAIGSVTGSVRFFGLTPTSMKLEGLDRHQRLLDSYR 720
           LDD LEL DY  NFRRMFGN RMDA +GSV G VRFFGLTPTSMKLEGLDRH RL+DSY+
Sbjct: 661 LDDELELDDYVVNFRRMFGNARMDAVLGSVDGKVRFFGLTPTSMKLEGLDRHHRLIDSYK 720

Query: 721 KLHKARARFAQAA 733
           KLHKARA+ A A+
Sbjct: 721 KLHKARAKAALAS 733


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,620,280
Number of extensions: 66061
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 646
Effective length of database: 888,291
Effective search space: 573835986
Effective search space used: 573835986
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)