BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3919.p (891 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979798|ref|YP_001353008.1| ATP-dependent Clp protease ATP-... 532 e-152 gi|152980685|ref|YP_001354204.1| ATP-dependent Clp protease ATP-... 277 2e-75 >gi|152979798|ref|YP_001353008.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Janthinobacterium sp. Marseille] Length = 859 Score = 532 bits (1370), Expect = e-152, Method: Compositional matrix adjust. Identities = 318/795 (40%), Positives = 464/795 (58%), Gaps = 56/795 (7%) Query: 39 HLFLALLDQPQSDFSLIARRSGISIDSLQADLEREIATFK--NGNTRTPVLSPHLQTLFE 96 H+ +ALL Q S + +R+G +I+ + L + +G + L +L Sbjct: 33 HVLVALLSQDDSSTRSLLQRAGANINGMTTALRSALDRLPKVSGTGGEVQIGRDLSSLLN 92 Query: 97 HAWLIASLDGGNPAIRSSHLLLALL-TQSELSQLAYRGSKLFAKFKVAELKHDLYKLTEG 155 A + + G + I + +LLAL +SE ++A LT Sbjct: 93 LADKESQMHG-DQFIATEMVLLALTEDKSEAGKIARENG-----------------LTRK 134 Query: 156 SVEALAESVSGQGPAGDMNESADPVGEMNARPSGKTPALDQYTTQLTQRARDGKIDPVIG 215 ++EA ++V G +SAD GE G+ AL +YT LT+RAR GK+DPVIG Sbjct: 135 ALEAAIKAVRGSSKV----DSAD--GE------GQREALKKYTLDLTERARIGKLDPVIG 182 Query: 216 RDGEIRQAVDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPQALQGVEIHTLDM 275 RD EIR+A+ +L RR +NNP+L GE GVGKTA+VEGLA RI G+VP +L+G + +LDM Sbjct: 183 RDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPDSLKGKRVLSLDM 242 Query: 276 GLLQAGASVKGEFENRLKNVIDEVKKSPHPIILFIDEAHTMIGAGGQAGQNDAANLLKPA 335 L AGA +GEFE RLK V+ E+ + I+FIDE HT++GAG G DA N+LKPA Sbjct: 243 ASLLAGAKYRGEFEERLKAVLTELAEDEGQTIVFIDEMHTLVGAGKAEGAMDAGNMLKPA 302 Query: 336 LARGELRTIAATTWSEYKKYFEKDAALARRFQVIKVEEPTEEVACAMLRAMAPLMEKHFG 395 LARGEL + ATT EY+KY EKDAAL RRFQ I V EPT E A+LR + E H G Sbjct: 303 LARGELHCVGATTLDEYRKYIEKDAALERRFQKIIVAEPTVEATIAILRGLQEKYELHHG 362 Query: 396 VRVYDEAISEAVRLSHRYISGRQLPDKAISVLDTACAKVALGQNATPALLEGVSRRLERI 455 V + D AI A LSHRYI+ R LPDKAI ++D A +K+ + ++ P +++ + RR+ ++ Sbjct: 363 VDITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAASKIKIELDSKPEVMDKLDRRVIQL 422 Query: 456 AAEMAALEREAASGSLHEARLTELRSQHEAALAEQTDLKARWVQERG-------LNERIQ 508 E A+++E S + RL + + E E DL+ W E+ + E I+ Sbjct: 423 KIEREAIKKEKDEAS--QKRLALIEEEIERLGREYADLEEIWKAEKSSAQGSQHIKEEIE 480 Query: 509 QARAALEDANRNGQTGQDADAARAELKQLLDELKQ------HQGETPMVPVQVDGHVVAE 562 + R +E+A R + ++ + L QL +LK G+ +V QV +AE Sbjct: 481 KVRLQMEEATRKSDWQRVSELQYSTLPQLEAQLKNAVKGEVSAGKPQLVRTQVGAEEIAE 540 Query: 563 IVAGWTGIPLGKMVKDEIKTVLGLDALLRERVLGQPQATSAVAQRVRTSRANLDDPGKPK 622 +V+ TGIP+ +M+ E + +L ++ L +RV+GQ +A AV+ +R SRA L DP +P Sbjct: 541 VVSRATGIPVSRMMTGEREKLLQMEDALHKRVVGQHEAIVAVSDAIRRSRAGLGDPDRPY 600 Query: 623 GVFLFVGPSGVGKTETALALADVLYGGERKLITINMSEYQEAHTVSGLKGSPPGYVGYGE 682 G F+F+GP+GVGKTE ALA ++ E LI I+MSE+ E H+V+ L G+PPGYVGY E Sbjct: 601 GSFMFLGPTGVGKTELCKALASFMFDTEDSLIRIDMSEFMEKHSVARLIGAPPGYVGYEE 660 Query: 683 GGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQVFDKGVMDDGEGREIDFKNTIIILTS 742 GG LTEAVRR PY V+LLDE+EKAHPDV + QV D G M DG+GR +DFKNT+I++TS Sbjct: 661 GGYLTEAVRRKPYCVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTS 720 Query: 743 NVASAQMMQACLNKTAQELPTPDELDALIRPQLVKAFKPAFLGRL-KVIPYYPIADEVLV 801 N+ S ++ N+ P + + ++ F+P F+ R+ +++ ++ + ++ + Sbjct: 721 NLGSHKIQSMEGNE-------PALIKMAVMAEVQGHFRPEFINRIDEIVAFHALDEKNIG 773 Query: 802 EIIKLKLGRIAKRIA 816 I K++L + KR+A Sbjct: 774 SIAKIQLQVLEKRLA 788 >gi|152980685|ref|YP_001354204.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Janthinobacterium sp. Marseille] Length = 767 Score = 277 bits (709), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 166/410 (40%), Positives = 239/410 (58%), Gaps = 35/410 (8%) Query: 35 VDLEHLFLALLDQPQSDFSLIARRSGISIDSLQADLEREIATFKNGNTRT---------- 84 + +EHL LALLD P + + + R ++I+ DL + + F NT T Sbjct: 25 ITVEHLLLALLDNPSA--AEVLRACAVNIE----DLRKTLTNFIGDNTPTVPGAAEVDTQ 78 Query: 85 PVLSPHLQTLFEHAWL-IASLDGGNPAIRSSHLLLALLTQSELSQLAYRGSKLFAKFKVA 143 P L Q + + A + + S G + +++L+A+ + + + Y + + Sbjct: 79 PTLG--FQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSHAVYYLHQQGVTRL--- 133 Query: 144 ELKHDLYKLTEGSVEALAESVSGQGPAGDMNESADPVGEMNARPSGKTPALDQYTTQLTQ 203 D+ V +S + + P G E A P GE + S ALDQ+T L + Sbjct: 134 ----DVVNFISHGVRKDQQSDAQKAPEG--AEDA-PSGEGQQKES----ALDQFTQNLNK 182 Query: 204 RARDGKIDPVIGRDGEIRQAVDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPQ 263 A +GKIDP+IGR+GE+ + + L RRR+NNP+L GEAGVGKTA+ EGLA RI GDVP+ Sbjct: 183 MASEGKIDPLIGREGEVERVIQTLCRRRKNNPLLVGEAGVGKTAIAEGLAWRITQGDVPE 242 Query: 264 ALQGVEIHTLDMGLLQAGASVKGEFENRLKNVIDEVKKSPHPIILFIDEAHTMIGAGGQA 323 LQ +++LDMG L AG +G+FE RLK V+ ++K +P+ ILFIDE HT+IGAG + Sbjct: 243 VLQNAVVYSLDMGALLAGTKYRGDFEQRLKAVLKQLKDNPNG-ILFIDEIHTIIGAGSAS 301 Query: 324 GQN-DAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVIKVEEPTEEVACAM 382 G DA+NLLKPAL+ G+L+ I ATT++E++ FEKD AL+RRFQ I V EPT E + Sbjct: 302 GGTLDASNLLKPALSNGQLKCIGATTFTEFRGVFEKDHALSRRFQKIDVNEPTVEQTIQI 361 Query: 383 LRAMAPLMEKHFGVRVYDEAISEAVRLSHRYISGRQLPDKAISVLDTACA 432 LR + E+H GV+ A++ A L+ R+I+ R LPDKAI V+D A A Sbjct: 362 LRGLKSRFEEHHGVKYSASALTSAAELAARFINDRHLPDKAIDVIDEAGA 411 Score = 180 bits (457), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 106/317 (33%), Positives = 178/317 (56%), Gaps = 12/317 (3%) Query: 560 VAEIVAGWTGIPLGKMVKDEIKTVLGLDALLRERVLGQPQATSAVAQRVRTSRANLDDPG 619 + +I++ IP + +D+ + +D L+ V GQ A A+ ++ +RA L Sbjct: 430 IEDIISKIARIPAQTVNQDDRSKLQTIDRDLKNVVFGQDPALEALGSAIKVARAGLGKTD 489 Query: 620 KPKGVFLFVGPSGVGKTETALALADVLYGGERKLITINMSEYQEAHTVSGLKGSPPGYVG 679 KP G FLF GP+GVGKTE A LA ++ LI +MSEY E H VS L G+PPGYVG Sbjct: 490 KPIGSFLFSGPTGVGKTEAAKQLAFIMG---IDLIRFDMSEYMERHAVSRLIGAPPGYVG 546 Query: 680 YGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQVFDKGVMDDGEGREIDFKNTIII 739 + +GG+LTEA+ + P++V+LLDE+EKAHPD+ + QV D G + D GR+ DF+N III Sbjct: 547 FDQGGLLTEAITKKPHAVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKADFRNVIII 606 Query: 740 LTSNVASAQMMQACLNKTAQELPTPDELDALIRPQLVKAFKPAFLGRLK-VIPYYPIADE 798 +T+N + + + + T ++ T DE+ + R F P F RL +I + + +E Sbjct: 607 MTTNAGAESLQKRTIGFTEKK-ETGDEMADIKR-----MFTPEFRNRLDAIISFRALDEE 660 Query: 799 VLVEIIKLKLGRIAKRIAENHKAEFSYDKALVEAVLARCTEVDSGARNVDNILNGSLLPE 858 +++ ++ L ++ +++ E K E + + L + + + GAR + ++ + Sbjct: 661 IILRVVDKFLMQLEEQLHEK-KVEAIFTEKLRTFLAKKGFDPLMGARPMSRLIQDMIRKA 719 Query: 859 IAESVL-ARMAEGQSIS 874 +A+ +L R+ G ++ Sbjct: 720 LADELLFGRLVSGGKVT 736 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,866,202 Number of extensions: 75462 Number of successful extensions: 331 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 324 Number of HSP's successfully gapped: 3 Length of query: 891 Length of database: 1,221,021 Length adjustment: 92 Effective length of query: 799 Effective length of database: 880,897 Effective search space: 703836703 Effective search space used: 703836703 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)