BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3917.p
         (268 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982971|ref|YP_001354367.1| outer membrane protein A precur...    89   3e-19
gi|152981732|ref|YP_001352854.1| OmpA family protein [Janthinoba...    77   2e-15
gi|152982349|ref|YP_001354513.1| hypothetical protein mma_2823 [...    65   5e-12
gi|152980650|ref|YP_001353771.1| flagellar motor protein MotD [J...    57   1e-09
gi|152980803|ref|YP_001354158.1| peptidoglycan-associated lipopr...    56   3e-09

>gi|152982971|ref|YP_001354367.1| outer membrane protein A precursor
           [Janthinobacterium sp. Marseille]
          Length = 206

 Score = 88.6 bits (218), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 67/100 (67%), Gaps = 6/100 (6%)

Query: 170 QATLTPEGKRILDEIAATMLKLKGRHVEII---GNTDNEGLRASNISLSLARADAVKAYL 226
           +A L PEGK  LD++ +   KL G ++E+I   G+TD+ G  A N  LS+ RA+AVKAYL
Sbjct: 105 KAVLKPEGKAKLDDLTS---KLNGLNLEVIIAVGHTDSVGSDAYNQKLSVRRAEAVKAYL 161

Query: 227 SAKGVDESLLTTSGQGPDRPVASNATAEGRAKNRRIEFRI 266
             KGVD   + T G+G  +PVA+N TA GRA+NRR+E  +
Sbjct: 162 VGKGVDAKRVYTEGKGEKQPVATNKTAAGRAQNRRVEIEV 201


>gi|152981732|ref|YP_001352854.1| OmpA family protein
           [Janthinobacterium sp. Marseille]
          Length = 229

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 61/105 (58%)

Query: 164 VSFESGQATLTPEGKRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLARADAVK 223
           +SF +G++ + P  + ILD  A  ++      V IIG+TD+ G  A N  LS  RA   +
Sbjct: 108 ISFATGRSDINPSLQPILDRFATGLVDNPTATVTIIGHTDSTGSDAINNPLSFDRASRTR 167

Query: 224 AYLSAKGVDESLLTTSGQGPDRPVASNATAEGRAKNRRIEFRIAK 268
            YL+ +GV    +   G+G   P+ASNA A GRA+NRR+E  +A+
Sbjct: 168 DYLTGRGVAPQRIYVDGRGSHEPIASNADAAGRARNRRVEIFVAE 212


>gi|152982349|ref|YP_001354513.1| hypothetical protein mma_2823
           [Janthinobacterium sp. Marseille]
          Length = 1376

 Score = 64.7 bits (156), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 14/114 (12%)

Query: 166 FESGQATLTPEGKRILD----EIAATMLKLKGRHVEIIGNTDNEGLR-------ASNISL 214
           F SG+A LTP  K  LD    EI A    + G  + ++G+TDN+GL          N  L
Sbjct: 95  FVSGKADLTPSAKESLDALVAEIHARKGVIAGMRIAVVGHTDNQGLSPNAKRIFTDNQGL 154

Query: 215 SLARADAVKAYLSAKGVDESLLTTS--GQGPDRPVASNATAEGRAKNRRIEFRI 266
           S ARA  V AYL  + ++   +T S  G+G  +P+ASNAT EG ++NRR+  ++
Sbjct: 155 SEARALTVAAYLK-QALNNPAITYSIDGKGESQPLASNATPEGMSRNRRVALQV 207


>gi|152980650|ref|YP_001353771.1| flagellar motor protein MotD
           [Janthinobacterium sp. Marseille]
          Length = 259

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 7/126 (5%)

Query: 145 LRVSTSEQGLLDNALANRVVSFESGQATLTPEGKRILDEIAATMLKLKGRHVEIIGNTDN 204
           +RV+ + +G+  +   N  V F  G+A L  + +  L  +A  +LK     +++ G+TDN
Sbjct: 120 VRVTQTNRGV--SVEINASVLFAPGEAKLNAQSEAALRAVA-QVLKDVDNDIQVEGHTDN 176

Query: 205 ----EGLRASNISLSLARADAVKAYLSAKGVDESLLTTSGQGPDRPVASNATAEGRAKNR 260
                 +  SN  LS  RA +V     A GV E  L   G G + PV SN T EGR +NR
Sbjct: 177 TPINNTMFPSNWELSAVRASSVVRLFLANGVAEKRLVAMGHGANLPVDSNDTTEGRLRNR 236

Query: 261 RIEFRI 266
           R++  I
Sbjct: 237 RVQLMI 242


>gi|152980803|ref|YP_001354158.1| peptidoglycan-associated
           lipoprotein [Janthinobacterium sp. Marseille]
          Length = 169

 Score = 55.8 bits (133), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 56/105 (53%)

Query: 159 LANRVVSFESGQATLTPEGKRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLAR 218
           LA R + F+     + PE +++++  A  +   +GR + I GNTD+ G    N++L   R
Sbjct: 62  LAKRSIYFDFDSYIVKPEFQQVVENHAKYLKSNQGRKIIIQGNTDDRGGAEYNLALGQKR 121

Query: 219 ADAVKAYLSAKGVDESLLTTSGQGPDRPVASNATAEGRAKNRRIE 263
           A+AV+  LS  GV E+ +     G ++P A  +     A+NRR +
Sbjct: 122 AEAVRKSLSLLGVPETQMEAVSLGKEKPKALGSDEAAWAENRRAD 166


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.311    0.126    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 547,675
Number of extensions: 21057
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 5
Length of query: 268
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 186
Effective length of database: 917,867
Effective search space: 170723262
Effective search space used: 170723262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)