BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3906.p (507 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 398 e-112 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 397 e-112 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 391 e-110 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 386 e-108 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 379 e-106 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 398 bits (1022), Expect = e-112, Method: Compositional matrix adjust. Identities = 257/511 (50%), Positives = 340/511 (66%), Gaps = 13/511 (2%) Query: 1 MKIGIRLGGSFMLLTLLACVLIIASILTLTRIGQHWDNFSGTVLNK----QDYATQGYIK 56 +KI RL F LL L ++ + IL L +G D + T+L K Q++ + + Sbjct: 6 LKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAVDVN 65 Query: 57 LGESVHNFKNYILRGKDYDQQFLADMDAIANLVAQYRKLGVDDPKEEALLQKISSGERNY 116 ++ + K + + Q+ + AN + + + + P+++ L +++ Y Sbjct: 66 GARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEELVVARNAY 125 Query: 117 RQALAKVQSLKAAGTSITDIDASISGADKILGA--GFAGLLAIAHEN----TNGTGQKIS 170 R V LKA G +A + +K+L A ++ + +N + G I Sbjct: 126 RDIRQTVFKLKAEGKLP---EAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAGTSIQ 182 Query: 171 AAISAGKSIELGVGVLVVVLAAALATLATRSITRPVREAVQIAKTVAAGDLGSRIEVTRK 230 +A +G+S+ +G+ V L A SITRP+ AV +A+TVA+GDL ++IEV+ Sbjct: 183 SAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAKIEVSSN 242 Query: 231 DETGELLQALKDMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETA 290 DETG+L+QALKDM SL + V VR+G++TI TAS QIA GNLDLS+RTE+QASSL ETA Sbjct: 243 DETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSLGETA 302 Query: 291 AAMEQITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVSTMDEIQASAREIAEIIS 350 A+M Q+TSTVR+NAD+ARQAN++A S S+VA + G VVS+VV TM I SAR+I +IIS Sbjct: 303 ASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKIVDIIS 362 Query: 351 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEIKDLIGNSVE 410 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA AAKEIK LIG+SV Sbjct: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIGDSVG 422 Query: 411 KVETGSKLVKDAGATIEELVMNVRNVTQIMSEISAASGEQEAGIEQVNQAIVQMDTVTQQ 470 KVE GSKLV +AG+T+ E+V +V+ VT IM+EI AAS EQ +GI+QVNQAI QMD VTQQ Sbjct: 423 KVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQVTQQ 482 Query: 471 NAALVEEAAAATEALKEQARRLAESVSVFRL 501 NAALVEEAAAA E+L++QA LA VS F+L Sbjct: 483 NAALVEEAAAAAESLQDQAGNLARVVSQFKL 513 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 397 bits (1021), Expect = e-112, Method: Compositional matrix adjust. Identities = 225/333 (67%), Positives = 279/333 (83%) Query: 169 ISAAISAGKSIELGVGVLVVVLAAALATLATRSITRPVREAVQIAKTVAAGDLGSRIEVT 228 + A ++G++I + +G + ++L+A LA L +RSITRP+ AV +A+TVA+GDL ++I+ + Sbjct: 183 VDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAVSVARTVASGDLRNKIQSS 242 Query: 229 RKDETGELLQALKDMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEE 288 DETG+LL+AL+DMN L + V VRTG +TI TAS QIA GNLDLS+RTE+QASSLEE Sbjct: 243 SNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEEQASSLEE 302 Query: 289 TAAAMEQITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVSTMDEIQASAREIAEI 348 TA++ME++TSTV++NAD+ARQAN +A S S VA + G VVS VV TM++I ASA++I +I Sbjct: 303 TASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINASAKKIVDI 362 Query: 349 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEIKDLIGNS 408 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA AAKEIK LIG+S Sbjct: 363 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGDS 422 Query: 409 VEKVETGSKLVKDAGATIEELVMNVRNVTQIMSEISAASGEQEAGIEQVNQAIVQMDTVT 468 V+KVE GSKLV +AG T++E+V +V++VT IMSEI AAS EQ AGIEQVNQAI QMD VT Sbjct: 423 VDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQVT 482 Query: 469 QQNAALVEEAAAATEALKEQARRLAESVSVFRL 501 QQNAALVEEAAAA E+L EQA +LAE+VSVF+L Sbjct: 483 QQNAALVEEAAAAAESLNEQAAKLAEAVSVFKL 515 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 391 bits (1004), Expect = e-110, Method: Compositional matrix adjust. Identities = 269/525 (51%), Positives = 343/525 (65%), Gaps = 41/525 (7%) Query: 1 MKIGIRLGGSFMLLTLLACVLIIASILTLTRIGQHWDNFS---GTVLNKQDYATQGYIKL 57 +KIG RL SF + +L L++ + L TRIG D S G K A L Sbjct: 4 LKIGQRLSLSFGSMVIL---LVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 58 GESVHNFKNYILRGKDYDQQFLADMDAIANLVAQYRKLG-VDDPKEEAL--LQKISSGER 114 + N +N +L M A + A+ ++G D AL L+K ER Sbjct: 61 NQIARNMRNALL------------MTEKAAIQAELTQIGKATDSLNNALVELEKTVRSER 108 Query: 115 NYRQALAKVQS------------LKAAGTSITD-----IDASISGADKILGAGFAGLLAI 157 RQ +A +Q+ +K A I D + A + A A L+ Sbjct: 109 G-RQTIAGLQADRSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDY 167 Query: 158 AHENTNGTGQKISAAISAGKSIELGV-GVLVVVLAAALATLATRSITRPVREAVQIAKTV 216 +E +G + +A S + + +G+ ++ V++AA A LATRSITRP+ +AV +A+ V Sbjct: 168 QNELMKKSGAEANAKASQTQLL-IGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKV 226 Query: 217 AAGDLGSRIEVTRKDETGELLQALKDMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLS 276 A GDL I V KDETG+LLQALKDMN L ++V VR G+DTI +AS QIA GNLDLS Sbjct: 227 ADGDLTGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLS 286 Query: 277 ARTEQQASSLEETAAAMEQITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVSTMD 336 +RTEQQASSLEETA++ME++TSTV++NA++ARQ+N +A S SEVA R G VVS VV TM Sbjct: 287 SRTEQQASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMG 346 Query: 337 EIQASAREIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAT 396 EI SA++I +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+ Sbjct: 347 EINDSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAS 406 Query: 397 AAKEIKDLIGNSVEKVETGSKLVKDAGATIEELVMNVRNVTQIMSEISAASGEQEAGIEQ 456 AAKEIK+LIG+SV+KV GS+LV DAGAT+ E+V +V+ VT IMSEI+AAS EQ GIEQ Sbjct: 407 AAKEIKELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQ 466 Query: 457 VNQAIVQMDTVTQQNAALVEEAAAATEALKEQARRLAESVSVFRL 501 +NQA++QMD VTQQNAALVEEAAAA E+L+ QA L++ V VF+L Sbjct: 467 INQAVMQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKL 511 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 386 bits (992), Expect = e-108, Method: Compositional matrix adjust. Identities = 219/319 (68%), Positives = 264/319 (82%) Query: 183 VGVLVVVLAAALATLATRSITRPVREAVQIAKTVAAGDLGSRIEVTRKDETGELLQALKD 242 + V+ V+++A L LATRSITRP+ +AV +A+ VA GDL I VT KDETG+LLQAL+D Sbjct: 193 LSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSKDETGQLLQALQD 252 Query: 243 MNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAAAMEQITSTVRR 302 MN+ L R+V VR G+DTI TAS+QIA GNLDLS+RTE+QASSLEETA++ME++TSTV++ Sbjct: 253 MNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQ 312 Query: 303 NADHARQANAMAGSVSEVASRSGLVVSDVVSTMDEIQASAREIAEIISVIDGIAFQTNIL 362 NAD+ARQ+N +A + SEVA R G VVS VV TM I SA +I +II VIDGIAFQTNIL Sbjct: 313 NADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIGVIDGIAFQTNIL 372 Query: 363 ALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEIKDLIGNSVEKVETGSKLVKDA 422 ALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA+AAKEIK LI +SVEKV GS+LV DA Sbjct: 373 ALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVEKVNNGSRLVHDA 432 Query: 423 GATIEELVMNVRNVTQIMSEISAASGEQEAGIEQVNQAIVQMDTVTQQNAALVEEAAAAT 482 G T+ E+V +VR VT IM EI+AAS EQ GIEQ+NQA++QMD VTQQNAALVEEAAAA Sbjct: 433 GTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQNAALVEEAAAAA 492 Query: 483 EALKEQARRLAESVSVFRL 501 E+L++QA L++ VSVF+L Sbjct: 493 ESLQDQANNLSQVVSVFKL 511 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 379 bits (973), Expect = e-106, Method: Compositional matrix adjust. Identities = 210/316 (66%), Positives = 257/316 (81%) Query: 186 LVVVLAAALATLATRSITRPVREAVQIAKTVAAGDLGSRIEVTRKDETGELLQALKDMNS 245 +V+ A T ITRP++ AV A+ VA GDL + I+ KDE G+LL ALKDMN Sbjct: 199 MVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIKAESKDECGQLLAALKDMND 258 Query: 246 SLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAAAMEQITSTVRRNAD 305 LQR+VG VR G++TI TAS +IA GNLDLS+RTEQQASSLEETA++ME++TSTV++NAD Sbjct: 259 GLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEETASSMEELTSTVKQNAD 318 Query: 306 HARQANAMAGSVSEVASRSGLVVSDVVSTMDEIQASAREIAEIISVIDGIAFQTNILALN 365 +ARQAN +A S SEVA + G VVS VV TM I S+R+I +IISVIDGIAFQTNILALN Sbjct: 319 NARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDIISVIDGIAFQTNILALN 378 Query: 366 AAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEIKDLIGNSVEKVETGSKLVKDAGAT 425 AAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LIG+SV KV+TG+KLV +AGAT Sbjct: 379 AAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSVGKVDTGNKLVAEAGAT 438 Query: 426 IEELVMNVRNVTQIMSEISAASGEQEAGIEQVNQAIVQMDTVTQQNAALVEEAAAATEAL 485 ++E+V ++R VT IM EI+AAS EQ AGIEQ+NQAI QMD VTQQNA+LVEEAAAA E++ Sbjct: 439 MDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQQNASLVEEAAAAAESM 498 Query: 486 KEQARRLAESVSVFRL 501 ++QAR+L + V F+L Sbjct: 499 QDQARKLGQVVGAFKL 514 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.127 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 834,630 Number of extensions: 27944 Number of successful extensions: 216 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 21 Length of query: 507 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 420 Effective length of database: 899,382 Effective search space: 377740440 Effective search space used: 377740440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)