BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3904.p (591 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980951|ref|YP_001354781.1| acyl-CoA dehydrogenase oxidored... 535 e-153 gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase [Janthin... 388 e-109 gi|152980833|ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthin... 108 1e-24 >gi|152980951|ref|YP_001354781.1| acyl-CoA dehydrogenase oxidoreductase protein [Janthinobacterium sp. Marseille] Length = 596 Score = 535 bits (1379), Expect = e-153, Method: Compositional matrix adjust. Identities = 270/574 (47%), Positives = 365/574 (63%), Gaps = 15/574 (2%) Query: 5 YTPPLREFAFVLDEVLQAPQVLRALPAHAELDGELMMQVLEEAGRFAANVVAPLNAIGDR 64 Y PLR+ FVL E+L L+ LP HA++D +++ QVLEE G+F + V+ PLN GDR Sbjct: 4 YIAPLRDMQFVLHELLHVADELKVLPKHADIDADIINQVLEEGGKFTSEVLFPLNHSGDR 63 Query: 65 EGCRLEHGA--VSTPPGFVRAYAQFCEGGWPALACAPEHGGQGLPHVLDCALYEMLSAAN 122 EGC+L+ V+ P GF AY Q+ GWP+L C PE+GGQGLP VL + YEML+++N Sbjct: 64 EGCKLDTSTHEVTPPKGFKAAYEQYVAAGWPSLTCDPEYGGQGLPMVLQNSFYEMLNSSN 123 Query: 123 HGWTMYPGLLHGAYACLATHGSPQLQARYLEQIASGQWLATMCLTEAQAGSDLGQLRTRA 182 WTMYPGL HGAY CL HG+ Q +A YL ++ SG+W TMCLTEAQ G+DLG LR++A Sbjct: 124 QAWTMYPGLSHGAYECLYAHGTEQQKALYLPKLVSGEWTGTMCLTEAQCGTDLGLLRSKA 183 Query: 183 VPQEDGSYRITGDKIFISGGEHDLTDNIVHLVLARLPDALPGSKGLSLLLAPRVLPD--- 239 PQ DGSY+ITG KIFIS GEHD+ NI+HLVLARLPDA G+KG+SL + P+ LPD Sbjct: 184 EPQADGSYKITGSKIFISAGEHDMAANILHLVLARLPDAPEGTKGISLFIVPKFLPDAAG 243 Query: 240 --GSRNGIHCTGIEHKMGIHGSATCSLHFEQAQAWLVGEPGRGLAAMFVMMNAARLHVGA 297 G+RN I C +E KMGIHG+ATC ++ + A WL+GEP +GL AMFVMMNAARL VG Sbjct: 244 KLGARNPIFCGALEEKMGIHGNATCQMNIDGATGWLIGEPNKGLNAMFVMMNAARLGVGM 303 Query: 298 QGLGLAEAAWQRASAYARERRQSRA---PGGTGT--DLIVRHPAVQKLLMEQRCRIEGAR 352 Q LGL E A+Q A YA++R Q R+ P T D I+ HP V+++L+ + EG R Sbjct: 304 QSLGLTEVAYQNALVYAKDRLQMRSLTGPKATDKPADPIIVHPDVRRMLLTAKAYAEGGR 363 Query: 353 MLTCWAGLLLDLAEHDTDAAMRRVHHERLELITPVIKAFLTDQGFQCASRALQVFGGHGY 412 + + L +D + D A+R + + L+TP+IKAFLTD G+ S A+QV+GGHG+ Sbjct: 364 AFSSYVALQIDKELNHPDEAVRAEAVDEVALLTPIIKAFLTDNGWISTSEAMQVYGGHGF 423 Query: 413 VVETGIEQFMRDARITMIYEGSNEIQAIDFLLRKALADDRRRLHDFLALVSADAEDVSV- 471 + E G+EQ++RD+RI MIYEG+N IQ++D L RK L D+ +L F A + A E+ Sbjct: 424 ISEWGMEQYVRDSRINMIYEGTNTIQSLDLLGRKILLDNGAKLRKFGAKIQAFIEENGTD 483 Query: 472 --LGDQARLLKNAVDKLKDYAQRIAQQAAQEPTLPYFLADEMLRLTGHVALGWMWLRAGR 529 + + L + DK+ I +A Q P A LR+ GH+ + + + + Sbjct: 484 EAMSEFITPLADLADKVTKLTMEIGMKAFQNPDEVGAAAVPYLRVAGHLVYAYFFAQMAK 543 Query: 530 RALSALAADPRYYGSKRDTACYHFAFIFAEVHQL 563 AL+ +Y SK TA ++FA + E L Sbjct: 544 IALAKQGDSDPFYKSKLATARFYFARLLPETAML 577 >gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] Length = 596 Score = 388 bits (997), Expect = e-109, Method: Compositional matrix adjust. Identities = 230/590 (38%), Positives = 317/590 (53%), Gaps = 30/590 (5%) Query: 3 MSYTPPLREFAFVLDEVLQAPQVLRALPAHAELDGELMMQVLEEAGRFAANVVAPLNAIG 62 MSY PL++ FV++E L + ALP + E + VLEE RF V+APLN G Sbjct: 1 MSYVAPLKDMLFVMNE-LADLAAINALPGCEDATPETVEAVLEENARFCGEVIAPLNQAG 59 Query: 63 DREGCRLEHGAVSTPPGFVRAYAQFCEGGWPALACAPEHGGQGLPHVLDCALYEMLSAAN 122 DR + G V+T PGF A+ + GW + + GGQGLP ++ EML++A+ Sbjct: 60 DRHPSEWKDGKVTTTPGFKEAFKAYAAAGWQGVQHPVDFGGQGLPKLVATPCMEMLNSAS 119 Query: 123 HGWTMYPGLLHGAYACLATHGSPQLQARYLEQIASGQWLATMCLTEAQAGSDLGQLRTRA 182 + + P L GA L T GS Q + ++L +G+W TM LTE QAGSDL +R+RA Sbjct: 120 LSFALCPLLTDGAIEALMTAGSDQQKEKFLPNFIAGKWTGTMNLTEPQAGSDLALVRSRA 179 Query: 183 VPQEDGSYRITGDKIFISGGEHDLTDNIVHLVLARLPDALPGSKGLSLLLAPRVLPD--- 239 VPQ DG+Y+I+G KIFI+ GEHD+ +NI+HLVLAR PDA G KG+SL L P+ L + Sbjct: 180 VPQGDGTYKISGTKIFITYGEHDMAENIIHLVLARTPDAPEGVKGISLFLVPKFLVNEDG 239 Query: 240 --GSRNGIHCTGIEHKMGIHGSATCSLHFEQ---AQAWLVGEPGRGLAAMFVMMNAARLH 294 G RN C IEHK+GI S T L F A L+G+ RGL MF+MMNAAR Sbjct: 240 SLGERNDAFCVSIEHKLGIKASPTAVLQFGDHGGAIGTLIGQENRGLETMFIMMNAARFA 299 Query: 295 VGAQGLGLAEAAWQRASAYARERRQSRAPGGTGTDL-IVRHPAVQKLLMEQRCRIEGARM 353 VG QG+ +AE A+Q+A AYA++R QS+ G+ T + I+ P V+++LM R +IE AR Sbjct: 300 VGIQGISVAERAYQKAVAYAKDRVQSKDLEGSATAVSIIHQPDVRRMLMSMRAQIEAARA 359 Query: 354 LTCWAGLLLDLAEHDTDAAMRRVHHERLELITPVIKAFLTDQGFQCASRALQVFGGHGYV 413 L D+A H D +R E + P+IK + T+ AS LQ+ GG G++ Sbjct: 360 LAYVGASAFDIAHHHGDEKVRDAQQAFYEFLVPIIKGWSTEMSIDVASTGLQIHGGMGFI 419 Query: 414 VETGIEQFMRDARITMIYEGSNEIQAIDFLLRKALADDRRRLHDFLALVSADAE------ 467 ETG Q+ RDARI IYEG+ IQA D + RK + D +A V A Sbjct: 420 EETGAAQYYRDARILTIYEGTTAIQANDLVGRKTVRDGGAVARGIIAAVRATESELARAA 479 Query: 468 --DVSVLGDQARLLKNAVDKLKDYAQRIAQQAAQ---EPTLPYFLADEMLRLTGHVALGW 522 D+ +G A+D++ Y Q + ++PY L+L G V GW Sbjct: 480 TPDLKAIGAHLAAASTALDEVVAYVVANIQSDIKGVFAGSVPY------LKLAGIVLCGW 533 Query: 523 MWLRAGRRA---LSALAADPRYYGSKRDTACYHFAFIFAEVHQLSSVIEG 569 RA A L A + D ++Y +K TA + + ++ S I G Sbjct: 534 QMGRAALIAQAKLDAGSGDAKFYQAKIATARFFADYFLSQAGAYRSAITG 583 >gi|152980833|ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] Length = 547 Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 124/287 (43%), Gaps = 29/287 (10%) Query: 161 LATMCLTEAQAGSDLGQLRTRAVPQEDGS----YRITGDKIFISGGEHDLTDNIVHLVLA 216 L M +TE Q GSD+ T A P E Y +TG K F S D HLVLA Sbjct: 177 LVGMGMTEKQGGSDVRSNTTVARPLESAGRGQPYALTGHKWFFSAPMCD-----AHLVLA 231 Query: 217 RLPDALPGSKGLSLLLAPRVLPDGSRNGIHCTGIEHKMGIHGSATCSLHFEQAQAWLVGE 276 R GLS PR PDGS+N I ++ K+G +++ + F+ A +VGE Sbjct: 232 RT------EAGLSCFFVPRWRPDGSKNAILIQRLKDKLGNRSNSSSEVEFQDAYGVMVGE 285 Query: 277 PGRGLAAMFVMMNAARLHVGAQGLGLAEAAWQRASAYARERRQSRAPGGTGTDLIVRHPA 336 GRG+ + M N RL GL A +A +AR R P + Sbjct: 286 DGRGIPTIIEMANHTRLDCVIGSTGLMRNALVQAIHHARHRHAFGLP-------LAEQAL 338 Query: 337 VQKLLMEQRCRIEGARMLTCWAGLLLDLAEHDTDAAMRRVHHERLELITPVIKAFLTDQG 396 +Q +L + E A L + + + A RRV +TP K ++ + Sbjct: 339 MQNVLADLALESEAATRLMLRLAQAAEAIDDPVERAWRRV-------VTPAAKFWICKRA 391 Query: 397 FQCASRALQVFGGHGYVVETGIEQFMRDARITMIYEGSNEIQAIDFL 443 + ++V+GG+GYV + + R+A + I+EGS + +D L Sbjct: 392 LEFTGECMEVWGGNGYVENAPMARMYREAPVNSIWEGSGNVMCLDVL 438 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,385,908 Number of extensions: 58550 Number of successful extensions: 169 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 3 Length of query: 591 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 502 Effective length of database: 891,988 Effective search space: 447777976 Effective search space used: 447777976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)