BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3903.p (251 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 219 2e-58 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 211 5e-56 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 207 4e-55 gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 179 2e-46 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 160 8e-41 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 219 bits (557), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/244 (45%), Positives = 172/244 (70%), Gaps = 7/244 (2%) Query: 1 MSELVLEVAQLRASYGKVQALHDIDLKLERGSIATVIGPNGAGKSTLLNAIMGVLP---A 57 M++ VL+++ L+ +YG ++A+ +DL++ +G + T+IG NGAGK+T L AI G LP Sbjct: 1 MTDTVLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRV 60 Query: 58 QGSVRYQGQAVERWSLEQRVMAGIALVPERRELFSSMSVEDNLLLGGFRRL-RLRQAQPL 116 +G + Y GQ ++ + V +A+VPE R +F+ MS+++NLL+G F R + A + Sbjct: 61 EGHIEYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRDDKDGIAADI 120 Query: 117 DQLATVFELFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPELLMLDEPSLGLAPRIVK 176 D+ F +FPRLKER +Q AGTLSGGE+QMLA+ RA+M+ PELL+LDEPS+GL+P +V+ Sbjct: 121 DKW---FGVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMVE 177 Query: 177 EILQIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTMQGESARLAGDAQVIQAY 236 +I +++ + GI++LLVEQNA+ ALQ A+ YV+E G VTM G++ ++ D +V +AY Sbjct: 178 KIFEVIRTVSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSDPKVREAY 237 Query: 237 LGFG 240 LG G Sbjct: 238 LGEG 241 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 211 bits (536), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 108/235 (45%), Positives = 156/235 (66%), Gaps = 3/235 (1%) Query: 5 VLEVAQLRASYGKVQALHDIDLKLERGSIATVIGPNGAGKSTLLNAIMGVLP-AQGSVRY 63 +L++ ++ YG ++ I L++ G I T+IG NGAGKST L AI G+ P A GS+R Sbjct: 16 MLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGSIRM 75 Query: 64 QGQAVERWSLEQRVMAGIALVPERRELFSSMSVEDNLLLGGFRRLRLRQAQPLDQLATVF 123 G V S + + GI+ PE R +F ++V +N+ +G +RR +A+ D + +F Sbjct: 76 NGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRKD--KAKVRDDMERMF 133 Query: 124 ELFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPELLMLDEPSLGLAPRIVKEILQIVS 183 + FPRL+ER Q AGTLSGGE+QMLAI RA+M++P L+M DEPSLGLAP IV++I ++ Sbjct: 134 DKFPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIFSLIR 193 Query: 184 ELRTAGISVLLVEQNARAALQTADYGYVLELGKVTMQGESARLAGDAQVIQAYLG 238 E+R+ G +VL+VEQNA AAL D GY+LE G + QG SA + + ++ +AYLG Sbjct: 194 EIRSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPEIRRAYLG 248 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 207 bits (528), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 108/239 (45%), Positives = 156/239 (65%), Gaps = 5/239 (2%) Query: 1 MSELVLEVAQLRASYGKVQALHDIDLKLERGSIATVIGPNGAGKSTLLNAIMGVLPA-QG 59 MS L+ V L Y KV LHD+ +++ G I ++G NGAGKSTL+ +I+G+ P QG Sbjct: 1 MSNLI--VKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQG 58 Query: 60 SVRYQGQAVERWSLEQRVMAGIALVPERRELFSSMSVEDNLLLGGFRRLRLRQAQPLDQL 119 + + G+ + + +GI+ +PE R++F M+V +NL LG F L D+L Sbjct: 59 EILWGGKNLAGEKTHNIIASGISCIPEGRKVFPRMTVAENLALGAF--LESSSTVVRDRL 116 Query: 120 ATVFELFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPELLMLDEPSLGLAPRIVKEIL 179 A V+E+FPRLKER +Q AGT+SGGE+ M++IGR +MA+P+LL++DEPSLGL+P VKE Sbjct: 117 ARVYEIFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENF 176 Query: 180 QIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTMQGESARLAGDAQVIQAYLG 238 +++ ++ GI+VLLVEQNAR L + YGYVL G+V QG + L+ + V AY G Sbjct: 177 KVIKQINALGITVLLVEQNARQTLAISHYGYVLSQGRVMAQGTAEALSSNDDVRSAYFG 235 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 179 bits (453), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 97/234 (41%), Positives = 144/234 (61%), Gaps = 7/234 (2%) Query: 5 VLEVAQLRASYGKVQALHDIDLKLERGSIATVIGPNGAGKSTLLNAIMGVLPAQGSVRYQ 64 +LE+ L A YGK LH ID+ ++ G I +++G NGAG+ST + A MG++ A G++R++ Sbjct: 4 LLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMVAATGTIRFK 63 Query: 65 GQAVERWSLEQRVMAGIALVPERRELFSSMSVEDNLLLGGFRRLRLRQAQPLDQLATVFE 124 G+ + + G+ V E RE+F ++SV NL+LG QA+ ++ Sbjct: 64 GKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGA-------QAKSRWSADDMYR 116 Query: 125 LFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPELLMLDEPSLGLAPRIVKEILQIVSE 184 LFPRL+ER+ QAG LSGGE+QMLA+ R +M PEL+M+DEP+ GLAP++V + + E Sbjct: 117 LFPRLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVANFLQE 176 Query: 185 LRTAGISVLLVEQNARAALQTADYGYVLELGKVTMQGESARLAGDAQVIQAYLG 238 L G+SVLL+EQ AL+ + YV+ G+V +G L DA V Q +LG Sbjct: 177 LVQRGVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAVRQEWLG 230 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 160 bits (405), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 94/227 (41%), Positives = 140/227 (61%), Gaps = 5/227 (2%) Query: 5 VLEVAQLRASYGKVQALHDIDLKLERGSIATVIGPNGAGKSTLLNAIMGVLP-AQGSVRY 63 +L+V QL YG L I L +E+G +++G NG GK+TLL +MGVLP A G+V Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSL 60 Query: 64 QGQAVERWSLEQRVMAGIALVPERRELFSSMSVEDNLLLGGFRRLRLRQAQPLDQLATVF 123 G+ + + QR GIA VP+ RE+F+ ++VE+NLL+G + ++A + V+ Sbjct: 61 DGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGMATK-SGKKASVIK--GEVY 117 Query: 124 ELFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPELLMLDEPSLGLAPRIVKEILQIVS 183 ELFP LKE ++ G LSGG++Q LAI RA++A+P+L++LDEP+ G+ P I+K+I +++S Sbjct: 118 ELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVIS 177 Query: 184 ELRTAG-ISVLLVEQNARAALQTADYGYVLELGKVTMQGESARLAGD 229 LR G I +LL EQ A + AD VL G+V G + D Sbjct: 178 LLRERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEMDDD 224 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 507,552 Number of extensions: 19117 Number of successful extensions: 272 Number of sequences better than 1.0e-08: 58 Number of HSP's gapped: 207 Number of HSP's successfully gapped: 62 Length of query: 251 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 170 Effective length of database: 921,564 Effective search space: 156665880 Effective search space used: 156665880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)