BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3902.p (596 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 218 1e-57 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 201 9e-53 gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino a... 160 2e-40 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 143 3e-35 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 140 3e-34 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 218 bits (554), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 116/253 (45%), Positives = 162/253 (64%), Gaps = 6/253 (2%) Query: 344 LLQVDQINKRFGGLVAVNGVSFNVKAGEIVGLIGPNGAGKSTTFNLVTGLLHASGGRVAF 403 +L + ++KRFGGL A++ V+ + G+I GLIGPNGAGK+T FN++TGL A G Sbjct: 6 ILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFEL 65 Query: 404 NGRDIAGLPARAIARLGIARTFQHVRLLPGMSVLENVALGAHMRSEQGFLRNTVNAMLHL 463 G+ + +A+ GIARTFQ++RL M+ LENV +G H+R+ QG A+ H Sbjct: 66 AGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLF----GAVFHH 121 Query: 464 E--RAEEQALLDEAARALHRVGLQHLMHEQAGNLALGQQRILEIARALCCDPLLLLLDEP 521 + R EE + A L VG+ A +L+ G QR LEIARAL DP LL LDEP Sbjct: 122 KAARREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEP 181 Query: 522 AAGLRHLEKQALSKVLQELRADGMSILLVEHDMEFVMELTDHIVVMEFGAKIAEGTPQEI 581 AAG+ EK L ++L +++A+G +ILL+EHD++ +M L D I V+++G IAEG P ++ Sbjct: 182 AAGMNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADV 241 Query: 582 QRHPAVIEAYLGG 594 Q+ PAVIEAYLGG Sbjct: 242 QKDPAVIEAYLGG 254 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 201 bits (511), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 110/255 (43%), Positives = 158/255 (61%), Gaps = 7/255 (2%) Query: 345 LQVDQINKRFGGLVAVNGVSFNVKAGEIVGLIGPNGAGKSTTFNLVTGLLHASGGRVAFN 404 L++ + R GL AV+ SF V AG+IV LIGPNGAGK+TT+N+++G + + GRV Sbjct: 10 LELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTSGRVKLF 69 Query: 405 GRDIAGLPARAIARLGIARTFQHVRLLPGMSVLENVALGAHMRSEQGFLRNTVNAMLHLE 464 G DI G+ I++LG+ R+FQ + +V EN+ H++ + G L+ A+L + Sbjct: 70 GHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQ----ALLRTQ 125 Query: 465 --RAEEQALLDEAARALHRVGLQHLMHEQAGNLALGQQRILEIARALCCDPLLLLLDEPA 522 R EE L +A L +GL + A NL+ G+QR+L + AL P +LLLDEPA Sbjct: 126 KFRREEADLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLLLDEPA 185 Query: 523 AGLRHLEKQALSKVLQELRADGMSILLVEHDMEFVMELTDHIVVMEFGAKIAEGTPQEIQ 582 AGL E +A ++++ + G+++LLVEHDM VM ++DHIVV+ +G IA G+P EIQ Sbjct: 186 AGLNPSETEAFKEMVRRIGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATGSPSEIQ 245 Query: 583 RHPAVIEAYLG-GIE 596 P VI AYLG GIE Sbjct: 246 NDPEVIRAYLGSGIE 260 >gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino acid transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 274 Score = 160 bits (405), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 101/273 (36%), Positives = 153/273 (56%), Gaps = 8/273 (2%) Query: 330 AAMSKRQGPAR--GAPLLQVDQINKRFGGLVAVNGVSFNVKAGEIVGLIGPNGAGKSTTF 387 A M+ + P G L+ V + RFGGL A++ ++ + GE++GL+GPNG+GK+T F Sbjct: 4 ATMNHVERPTHTIGGKLVGVTDLTMRFGGLTALDQLNMQINEGEVLGLLGPNGSGKTTFF 63 Query: 388 NLVTGLLHASGGRVAFNGRDIAGLPARAIARLGIARTFQHVRLLPGMSVLENVALGAHMR 447 N++TGL A+ G + + G+++ G + I R G+ARTFQ RL ++V +N+ +G + Sbjct: 64 NVLTGLYKATSGSIIYKGQEVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQH 123 Query: 448 SEQGFLRNTVNAMLHLERAEEQALLD--EAARALHRVGLQHLMHEQAGNLALGQQRILEI 505 G N RAE A + EA + L M E G + +R +E+ Sbjct: 124 MNHGLFFNLFQRKAF--RAEYDAYVGKVEALLNIFSPPLVARMFEPVGTFTMIDRRRIEV 181 Query: 506 ARALCCDPLLLLLDEPAAGLRHLEKQALSKVLQELRA--DGMSILLVEHDMEFVMELTDH 563 RAL P LLLLDEP+AG+ H E +AL + ++R + ++I+L+EH+M + +TD Sbjct: 182 CRALLSQPRLLLLDEPSAGMTHDETEALMDDILQVRGKLENLTIVLIEHEMNVIERITDR 241 Query: 564 IVVMEFGAKIAEGTPQEIQRHPAVIEAYLGGIE 596 +V +G KIAEGT EI P V AYLG E Sbjct: 242 CIVFNYGKKIAEGTYAEITADPNVQTAYLGEAE 274 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 143 bits (361), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 91/258 (35%), Positives = 138/258 (53%), Gaps = 20/258 (7%) Query: 345 LQVDQINKRFGGLVAVNGVSFNVKAGEIVGLIGPNGAGKSTTFNLVTGLLHASGGRVAFN 404 L++ ++ KRFG + G S + G+ + LIGPNGAGKST FNL++G S G + N Sbjct: 6 LELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSGDILLN 65 Query: 405 GRDIAGLPARAIARLGIARTFQHVRLLPGMSVLENV------ALGAHMRSEQGFLRNTVN 458 G IAG I R G++R+FQ + +SV EN+ +LG Q +N Sbjct: 66 GSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGYRYSFWQ-----RLN 120 Query: 459 AMLHLERAEEQALLDEAARALHRVGLQHLMHEQAGNLALGQQRILEIARALCCDPLLLLL 518 + + + EQ + +GL + +A L+ +QR LEI + +LLL Sbjct: 121 GLQDVNQRAEQ--------VMEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLL 172 Query: 519 DEPAAGLRHLEKQALSKVLQELRADGMSILLVEHDMEFVMELTDHIVVMEFGAKIAEGTP 578 DEP AG+ E A ++++++ A G ++L+VEHDM+ V L D I V+ +G IA TP Sbjct: 173 DEPTAGMSRSESDAAVELIRKISA-GKTLLMVEHDMDVVFGLADRIAVLVYGEIIACDTP 231 Query: 579 QEIQRHPAVIEAYLGGIE 596 I+ +P V +AYLG +E Sbjct: 232 DNIRNNPLVQQAYLGTVE 249 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 140 bits (352), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 141/255 (55%), Gaps = 17/255 (6%) Query: 340 RGAPLLQVDQINKRFGGLVAVNGVSFNVKAGEIVGLIGPNGAGKSTTFNLVTGLLHASGG 399 RG+ +L++++I R+G +N +S V GEIV LIG NGAGKSTT + GL + G Sbjct: 12 RGSNMLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHG 71 Query: 400 RVAFNGRDIAGLPARAIARLGIARTFQHVRLLPGMSVLENVALGAHMRSEQGFLRNTVNA 459 + NG ++G + GI+ + R+ P ++V EN+ +GA+ R ++ +R+ + Sbjct: 72 SIRMNGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRKDKAKVRDDMER 131 Query: 460 MLHLERAEEQALLDEAARALHRVGLQHLMHEQAGNLALGQQRILEIARALCCDPLLLLLD 519 M D+ R RV + AG L+ G+Q++L IARAL P L++ D Sbjct: 132 M-----------FDKFPRLRERV------QQVAGTLSGGEQQMLAIARALMSRPRLVMFD 174 Query: 520 EPAAGLRHLEKQALSKVLQELRADGMSILLVEHDMEFVMELTDHIVVMEFGAKIAEGTPQ 579 EP+ GL + + +++E+R++G ++L+VE + + + D ++E G + +G+ Sbjct: 175 EPSLGLAPNIVEQIFSLIREIRSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSA 234 Query: 580 EIQRHPAVIEAYLGG 594 E++ +P + AYLGG Sbjct: 235 EMRANPEIRRAYLGG 249 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,263,184 Number of extensions: 52462 Number of successful extensions: 491 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 420 Number of HSP's successfully gapped: 73 Length of query: 596 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 507 Effective length of database: 891,988 Effective search space: 452237916 Effective search space used: 452237916 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)