BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3900.p
         (383 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a...    70   2e-13

>gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid
           transport systems, periplasmic component
           [Janthinobacterium sp. Marseille]
          Length = 385

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 13/227 (5%)

Query: 3   IKMKLAIKAGVLASMLACAGMAHAELTIGVVMSLTGPGSGLGIPAKNGFSLWPDTIG--- 59
           IK  LA   G LA   A +  A   + IGV   LTGP +  G    NG  +  D +    
Sbjct: 5   IKKSLAACIG-LAMFAATSAYAQETIKIGVTEPLTGPVAAAGTYVTNGARIAADYVNQNG 63

Query: 60  ---GEKVKLIILDDATDPTQASKNARRLVAEDKVDLIIGSAAVPPTLAIADVALETQ--- 113
              G+K++L+I D+ ++P +A  +  +L+ +DKV +++G+ +   TLAI    +E +   
Sbjct: 64  GVLGKKIQLVIEDNKSNPREAVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIEYEVPL 123

Query: 114 TVQLAISPIETAEGKDAWTFRLPQSTAVMAGGVVEQMKKMG--VKTIGFLGYSDSYGENW 171
            V+ A S   T  G + W FR   ++A+ A    + +      +K   FL  ++ +G   
Sbjct: 124 VVEAASSSKITTAG-NPWVFRTSPTSAMEAQAFSKVIDGYNPAIKKADFLVVNNDWGLGA 182

Query: 172 LKEMQRLATAAGMKMGTVERFSRADTSVTAQALRVVSSNPDAVLVVA 218
             E +++  A G+ +G  E  +   T ++AQ   +  S  D V V +
Sbjct: 183 AVEFKKMLEAKGIAIGRTETMTPDMTDLSAQLAALKGSGSDTVFVTS 229


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 871,519
Number of extensions: 35091
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 383
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 298
Effective length of database: 906,776
Effective search space: 270219248
Effective search space used: 270219248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)