BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3898.p (254 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Jant... 88 6e-19 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 86 3e-18 gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 85 4e-18 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 84 7e-18 gi|152982854|ref|YP_001353681.1| hypothetical protein mma_1991 [... 82 3e-17 >gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 272 Score = 87.8 bits (216), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 12/227 (5%) Query: 1 MQLQGQAALVTGGASGLGAETVRQLVQAGARVSILDVNMEAAQALADELR-----CHAVR 55 + +G+ ALVTG +SGLGA + L AGA+V + ++ + L E+ V Sbjct: 19 VNFEGKVALVTGASSGLGARFAKVLAMAGAQVILASRRVDRLKELRAEIEAEGGAAQVVS 78 Query: 56 CDITDSASVQAALDAAQEANGAPRILINCAGIGGAKRMVGKDGSAMPLEDFSRIVNVNLI 115 D+TD AS+++A+ A+ GA IL+N +G+ ++R+V P ED++ +++ N Sbjct: 79 LDVTDYASIKSAIAHAETETGAIDILVNNSGVSASQRLV----DVTP-EDYAHMMDTNQR 133 Query: 116 GTFNVIRLVAARMAAAEPLAEGERGVIVATASVAAFDGQVGQAGYAASKGGITAMTLPLA 175 G F V + VA RM A ++ I+ SVA Y SK + MT +A Sbjct: 134 GAFFVAQEVAKRMIARHKGDPKKQHRIINIGSVAGLRVVPELGLYCMSKAAVVHMTKAMA 193 Query: 176 RDLAQHGIRVVTIAPGLFLTPL-LYKLPDEVQQSLAASIPFPKRLGK 221 + + GI I PG T + L E Q + +P KRLGK Sbjct: 194 VEWGKFGINTNAICPGYIGTEMNLDYFQSEQGQQVLGMLP-RKRLGK 239 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 85.5 bits (210), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 116/253 (45%), Gaps = 27/253 (10%) Query: 1 MQLQGQAALVTGGASGLGAETVRQLVQAGARVSILDVNMEAAQALADELRC--HAVRCDI 58 + L GQ ALVTG + G+G ++L + GA+V + A A+++ L V D+ Sbjct: 4 VDLSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGKGVVLDV 63 Query: 59 TDSASVQAALDAAQEANGAPRILINCAGIGGAKRMVGKDGSAMPLED--FSRIVNVNLIG 116 D+A A +D Q+ GA IL+N AGI +D AM ++D + ++ NL Sbjct: 64 NDAARSVALIDEIQKEFGAVSILVNNAGIT-------QDQLAMRMKDEEWDSVIATNLTA 116 Query: 117 TFNVIRLVAARMAAAEPLAEGERGVIVATASVAAFDGQVGQAGYAASKGGITAMTLPLAR 176 + R V M A+ G I+ SV G GQ YAA+K G+ M+ LAR Sbjct: 117 VGRLSRAVLRGMMKAKT------GRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAR 170 Query: 177 DLAQHGIRVVTIAPGLFLTPLLYKLPDEVQQSLAASIPFPKRLGKAEEYA---------Q 227 ++ I V IAPG T + L ++ +L +P RLG E+ A Q Sbjct: 171 EIGSRNITVNCIAPGFIDTDMTKTLSEQQIAALLQQVPLG-RLGVPEDIAAAVSFLASPQ 229 Query: 228 LALHIATNLSLNG 240 + T L +NG Sbjct: 230 ASYITGTTLHVNG 242 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 85.1 bits (209), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 98/209 (46%), Gaps = 20/209 (9%) Query: 3 LQGQAALVTGGASGLGAETVRQLVQAGARVSIL---DVNMEAAQALADELRCHAVRC--- 56 L G+ ALVTG SG+G + L Q GA + + D N E A +R + V+C Sbjct: 6 LHGKTALVTGSTSGIGLGIAQALAQQGADIVLNGFGDAN-EIKTLQAALMRNYGVKCVHH 64 Query: 57 --DITDSASVQAALDAAQEANGAPRILINCAGIGGAKRMVGKDGSAMPLEDFSRIVNVNL 114 D++ A ++A + A + G IL+N AGI + + P+E + I+ +NL Sbjct: 65 PADMSKPAEIEAMMAFAAQQFGRVDILVNNAGIQHTETI-----EDFPVEKWDAIIAINL 119 Query: 115 IGTFNVIRLVAARMAAAEPLAEGERGVIVATASVAAFDGQVGQAGYAASKGGITAMTLPL 174 F+ RL M A G I+ ASV G V ++ Y A+K GI +T Sbjct: 120 SSAFHTTRLALPMMQAKN------WGRIINIASVHGLVGSVQKSAYVAAKHGIVGLTKVT 173 Query: 175 ARDLAQHGIRVVTIAPGLFLTPLLYKLPD 203 A ++A GI I PG LTPL+ K D Sbjct: 174 ALEMAHTGITCNAICPGWVLTPLVQKQVD 202 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 84.3 bits (207), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 116/256 (45%), Gaps = 27/256 (10%) Query: 8 ALVTGGASGLGAETVRQLVQAGARVSILDVNMEAAQALADEL---------RCHAVRCDI 58 ALVTGG GLG +L G +V ADE HA CD+ Sbjct: 5 ALVTGGMGGLGEAICIKLAALGYQVV---TTYSPGNKKADEWLKLMKESGYDFHAYPCDV 61 Query: 59 TDSASVQAALDAAQEANGAPRILINCAGIGGAKRMVGKDGSAMPLEDFSRIVNVNLIGTF 118 +D S Q + ++ G +L+N AGI + + K M D+ ++ NL F Sbjct: 62 SDYDSAQQCVAQIEKEMGPVDVLVNNAGI--TRDITFK---KMGKPDWDAVMATNLDSVF 116 Query: 119 NVIRLVAARMAAAEPLAEGERGVIVATASVAAFDGQVGQAGYAASKGGITAMTLPLARDL 178 N+ + V + + E G I+ +SV G GQ Y+A+K G+ T LA ++ Sbjct: 117 NMTKPVC------DGMVERGWGRIINISSVNGQKGAFGQTNYSAAKAGMHGFTKALALEV 170 Query: 179 AQHGIRVVTIAPGLFLTPLLYKLPDEV-QQSLAASIPFPKRLGKAEEYAQLALHIATNLS 237 A+ + V TI+PG T ++ +P +V + IP RLGK EE A L ++A++ + Sbjct: 171 ARKAVTVNTISPGYIGTKMVMAIPQDVLDTKIVPQIPM-GRLGKPEEIAGLVAYLASDEA 229 Query: 238 --LNGEVIRLDGALRL 251 L G I ++G + Sbjct: 230 AFLTGANIAINGGQHM 245 >gi|152982854|ref|YP_001353681.1| hypothetical protein mma_1991 [Janthinobacterium sp. Marseille] Length = 301 Score = 82.0 bits (201), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 87/182 (47%), Gaps = 10/182 (5%) Query: 2 QLQGQAALVTGGASGLGAETVRQLVQAGARVSILDVNMEAAQALADELRCH-----AVRC 56 Q +G+ A++TG ASG G E +Q G ++ + DV +A +A EL AV C Sbjct: 3 QFKGRVAVITGAASGFGREFAQQGAGLGLKLVLADVQQDALDRVAAELGAQGAEVLAVCC 62 Query: 57 DITDSASVQAALDAAQEANGAPRILINCAGIGGAKRMVGKDGSAMPLEDFSRIVNVNLIG 116 D++ + VQA DAA + GA +L N AG+G + S D+ ++ VNL G Sbjct: 63 DVSKAEQVQALADAAMQRFGAVHLLFNNAGVGSGGLVWENTAS-----DWDWVLGVNLFG 117 Query: 117 TFNVIRLVAARMAAAEPLAEGERGVIVATASVAAFDGQVGQAGYAASKGGITAMTLPLAR 176 + +R+ M A G G IV TASVA Y SK + ++T L + Sbjct: 118 VIHGVRIFTPLMLACAKDDPGYEGHIVNTASVAGLQNAPTMGIYNVSKHAVVSLTETLYQ 177 Query: 177 DL 178 DL Sbjct: 178 DL 179 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 552,567 Number of extensions: 21199 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 20 Length of query: 254 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 173 Effective length of database: 921,564 Effective search space: 159430572 Effective search space used: 159430572 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)