BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3896.p
         (620 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligas...    67   4e-12

>gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligase
           [Janthinobacterium sp. Marseille]
          Length = 560

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 20/169 (11%)

Query: 333 YSRLRMQFYAGAALAQPVWDKLHATAEATCGERIVMCCGLGMTETSPSALFVADLEVQ-A 391
           +S L++    G A+ + V DK              +C G G++ETSP+A        +  
Sbjct: 327 FSELKLCNGGGMAVQKVVNDKWREVTGCA------ICEGYGLSETSPTATANPPTTNEFT 380

Query: 392 GQIGIPTPGMEIKL-------VPNGDKIEIRYRGPNVTPGYWRAPEQTAEAFDEEGYFRS 444
           G IG+P    E+K+       VP+G   EI  RGP V  GYW  P +TA++   +G+F++
Sbjct: 381 GTIGLPVSSTELKIIDSDDNEVPHGSAGEIAIRGPQVMAGYWNNPVETAQSMTADGFFKT 440

Query: 445 GDAVRWLDPQHPDRGFMFDGRVAEDFKLYTGTWVSVGPLRALI-AHEGA 492
           GD +  +D    +RGF       +D  L +G  V    +  ++ AH G 
Sbjct: 441 GD-IGIMD----ERGFTKIVDRKKDMILVSGFNVYPSEIEGVVAAHPGV 484


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,554,226
Number of extensions: 68235
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 531
Effective length of database: 891,988
Effective search space: 473645628
Effective search space used: 473645628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)