BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3895.p
         (259 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980360|ref|YP_001351930.1| enoyl-CoA hydratase [Janthinoba...    99   4e-22

>gi|152980360|ref|YP_001351930.1| enoyl-CoA hydratase
           [Janthinobacterium sp. Marseille]
          Length = 258

 Score = 98.6 bits (244), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 128/263 (48%), Gaps = 12/263 (4%)

Query: 3   QHSDLLDIQVHGAIAEIALNRSAKRNALNDPMVRAIRDCFE--DLPPEVKVAIIHGRGEH 60
           Q+ ++L +++HG +  I LNR A  NALND ++  +    +  D   ++   II G  + 
Sbjct: 2   QYENIL-VEIHGKVGVITLNRPAALNALNDKLMDELGLALQSFDGDDDIGCMIITGSEKA 60

Query: 61  FCAGLDLSELRER---DTTESVHHSRMWHAAFEQISFGRVPVIAVLHGAVIGGGLELASA 117
           F AG D+  +      D  +  + +R W    EQI   R PVIA + G  +GGG ELA  
Sbjct: 61  FAAGADIGAMATYTYMDVYKGDYITRNW----EQIRSVRKPVIAAVAGYALGGGCELAMM 116

Query: 118 AHIRVAEPSAFYGLPEGQRGLFVGGGGSVRISRLIGVARMADMMLTGRVLSAEEGHQVGI 177
               +A  +A +G PE + G+  G GG+ R+ R +  ++  D+ LT R++ A E  + G+
Sbjct: 117 CDFIIAADTAKFGQPEIKLGIIPGAGGTQRLPRAVSKSKAMDLCLTARMMDAAEAERAGL 176

Query: 178 SQYSVAEGAGLDKARELAERIAR-NAPMTNYGVMHVLPRIHDQSIQDGLMTESLMAAVAG 236
               VA     ++A   A  IA  + PM    V   + R ++ ++ +G+  E  +     
Sbjct: 177 VSRVVAADKLHEEALAAATVIANMSLPMVMM-VKESINRAYETTLAEGVQFERRLFHSTF 235

Query: 237 SDPDTKGRLAAFLDHKQNKVKPS 259
           +  D K  + AF++ +    K S
Sbjct: 236 ATADQKEGMQAFIEKRAAHFKNS 258


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 617,463
Number of extensions: 26353
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 3
Length of query: 259
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 178
Effective length of database: 921,564
Effective search space: 164038392
Effective search space used: 164038392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)