BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3894.p
         (391 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino a...    64   1e-11
gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a...    62   5e-11

>gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino acid
           transport systems, periplasmic component
           [Janthinobacterium sp. Marseille]
          Length = 431

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 132/324 (40%), Gaps = 38/324 (11%)

Query: 14  ATNALAAPLAQAEDTIKVGLIAAFSGPFADYGKQMEGGIKAYMAQ--HGDQVAGKKVQVI 71
           AT  L  P       ++VG+IA   G     G+    G++   A+      + G+KV+++
Sbjct: 27  ATGLLGMPAFAQNKPLRVGIIAPRGGVAGTIGECGLRGVEWTTARINAAGGIGGRKVELV 86

Query: 72  IKDTTGPSPEIAKRLAQELVVRDKVDFLAGFGLTPEALAVAPIAEQAKKPMIIMNAASSI 131
           I++ T P   I +   ++LV+++KVD + G   +  +LA+AP AE ++ P I  +  +  
Sbjct: 87  IQEETSPKDTIDR--FRKLVLQEKVDCVQGIVSSGVSLALAPAAEDSRMPTIFWDGTTQD 144

Query: 132 ----ITTKSNYIARFSMTLPQVSGPMATW----ALKNGIKRVVTLVADYGPGIDAETAFK 183
                  K  Y+  F  T  +    MA+       K   KR+  +  DY  G +  TAF+
Sbjct: 145 GVKETMPKPKYV--FRSTDNECEAVMASLLAIKHFKGKFKRIACVNPDYSYGRNTWTAFQ 202

Query: 184 TNL--LGGGGEVVESIRVPLRNPEFAPYIQRIKDAKPQAVFIFVPAGEQSIAFMKGYRER 241
             L   G   EVV      + N +    +  +K AKP  +F  +   +  + FMK     
Sbjct: 203 ALLKKYGIEHEVVSEQWSKIGNLDLTSNVAALKAAKPDLIFSSLLFADLPV-FMKQAHNA 261

Query: 242 GLAEAGIKVIATGDLTDDHVMPAMGDSTLGVITTF--------HYSAAHDSPENKAFLKS 293
           GL E               V+PA G     +   F        H +   D P+  A  K 
Sbjct: 262 GLTEG-----------TRFVLPAAGWQHTAMKKEFTPEGIVWGHNTMYFDDPKASATQKE 310

Query: 294 FAAANPDAGR--PNFMAVAAYDGM 315
           F     D  +  P++ A  AY  M
Sbjct: 311 FVKWYADKYKDYPHWEADRAYFSM 334


>gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid
           transport systems, periplasmic component
           [Janthinobacterium sp. Marseille]
          Length = 385

 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 12/141 (8%)

Query: 9   LALISATNALAAPLAQAEDTIKVGLIAAFSGPFADYGKQMEGGIKA---YMAQHGDQVAG 65
           LA+ +AT+A A      ++TIK+G+    +GP A  G  +  G +    Y+ Q+G  V G
Sbjct: 15  LAMFAATSAYA------QETIKIGVTEPLTGPVAAAGTYVTNGARIAADYVNQNGG-VLG 67

Query: 66  KKVQVIIKDTTGPSPEIAKRLAQELVVRDKVDFLAGFGLTPEALAVAPIAEQAKKPMIIM 125
           KK+Q++I+D    +P  A    ++L+++DKV  L G   +   LA+ P   + + P+++ 
Sbjct: 68  KKIQLVIEDNKS-NPREAVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIEYEVPLVVE 126

Query: 126 NAASSIITTKSN-YIARFSMT 145
            A+SS ITT  N ++ R S T
Sbjct: 127 AASSSKITTAGNPWVFRTSPT 147


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 887,647
Number of extensions: 37481
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 3
Length of query: 391
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 306
Effective length of database: 906,776
Effective search space: 277473456
Effective search space used: 277473456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)