BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3893.p (371 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Ma... 115 4e-27 gi|152981746|ref|YP_001351981.1| porin [Janthinobacterium sp. Ma... 100 2e-22 gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinob... 99 5e-22 gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Ma... 90 2e-19 gi|152981718|ref|YP_001352190.1| porin [Janthinobacterium sp. Ma... 72 7e-14 >gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Marseille] Length = 327 Score = 115 bits (288), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 117/371 (31%), Positives = 162/371 (43%), Gaps = 48/371 (12%) Query: 4 KSTLRAVALAAAACATYAGGTGAALAQSSVTIYGIIDTGVVYTTNANANGDSVFKMPSLT 63 K TL A ++ A+ GA QSSVT+YG++D G+ NA +V + S Sbjct: 2 KKTLFAFSMLASMA-------GATYGQSSVTVYGVVDLGLKI---ENAGNGTVTGIDSGN 51 Query: 64 GTFPSRIGFKGTEDLGGGLQALFVLENGFAPDTGAMGQGNRLFGRQSYVGLKGNWGQISL 123 + SR+GFKGTEDLG GL+A FVLE GF D+G+ R F RQSYV L G +G++ L Sbjct: 52 QS-VSRVGFKGTEDLGNGLKANFVLEAGFNADSGSQSDATRFFNRQSYVSLAGGFGEVKL 110 Query: 124 GRQVNMTYLSQLKTDVLGPNIFAIG-SIDNYLPNARSDNAIGY-LGSFSGFTLGATYSFG 181 GR M + + D + I NY N R DN + Y + +G A YSF Sbjct: 111 GRVQTMVFTNSAVFDPFADTLAGDSVRIFNYGGN-RIDNTVNYSFAAKNGINGQAAYSF- 168 Query: 182 RDAAGPAGPAATNCPGEVAGNSKACRQVTALLGYDGKGWGVTSSYDILYGNTGASNGLTS 241 GEVAGN+ A R V +GY +Y TG + T+ Sbjct: 169 ---------------GEVAGNTSASRTVAGAIGYASGPLATVLTYQDTKDVTGNDSAKTT 213 Query: 242 SDNKDQRVTLNGYFMIGDVKIGGGVVDRRTRAAANTNTDSDLYYLGVSYPLSTA-LVLDA 300 + L F+ V G G +D R LG+ L++A ++ + Sbjct: 214 LIGGNYNFGLLQPFIAYAVNKGFGTLDTRDA------------LLGLKINLTSADTIMTS 261 Query: 301 QVSRLDVKNSPNDVTLSVARLTYSLSKRTALYTSLGYIKNSGTSAIAIDAGGSVGAGKNQ 360 + + D D T++LS RT LYTS + N +A + + AGK Sbjct: 262 YMQKRDKVIDNADAKQIAIGYTHNLSVRTNLYTSWARLSNDDNAAYRVTS-----AGKTD 316 Query: 361 LGVMTGIRHTF 371 GIRH F Sbjct: 317 KLFNIGIRHKF 327 >gi|152981746|ref|YP_001351981.1| porin [Janthinobacterium sp. Marseille] Length = 395 Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 105/366 (28%), Positives = 154/366 (42%), Gaps = 51/366 (13%) Query: 30 QSSVTIYGIIDTGVVYTTNANANGDSVFKMPSLTGTFPSRIGFKGTEDLGGGLQALFVLE 89 QS++ IYG ID G+ TN NG KM S + +RIG KGTEDLGGGL A F LE Sbjct: 57 QSTINIYGTIDAGIRNVTNTTKNGGDTLKMGSNGEYYNNRIGIKGTEDLGGGLNAHFHLE 116 Query: 90 NGFAPDTGAM-GQGNRLFGRQSYVGLKGNWGQISLGRQVNMTYLSQLKTDVLGPNIFAI- 147 GF TGA+ R F R S VG+ G++G I GR +++ + D I Sbjct: 117 TGFNTGTGALDNNAGRFFNRISSVGVAGSFGSIDFGRMPSVSCKTIFAYDPFQYRYVQIV 176 Query: 148 -------GSIDNYLP--------NARSDNAIGYLGSFSGFTLGATYSFGRDAAGPAGPAA 192 G+ D P R N + Y+G F T+ A +S Sbjct: 177 PLAGASAGNADGNAPGFPWGTIGGTRFSNDVQYIGKFDNVTILAEFS------------- 223 Query: 193 TNCPGEVAGNSKACRQVTALLGYDGKGWGVTSSYDILYGNTGASNGLTSSDNKDQRVTLN 252 GEV+G++ + + Y + + ++Y N + T + +VT Sbjct: 224 ---TGEVSGSNSSGSAQAVGMTYRPGPFVIGAAYTRQKPNVSIT--ATPEYQQQNQVTFG 278 Query: 253 GYFMIGDVKIGGGVVDRRTRAAAN-TNTDSDLYYLGVSYPLSTALVLDAQVSRLDV---- 307 G + ++I GG ++ A N + ++G SY + A+ + R + Sbjct: 279 GAYQADGLRIAGGYINTEADTAVQGINNQAKNSWIGASYDFTPAVSVTTGFYRTTLATGN 338 Query: 308 --KNSPNDVTLSVARLTYSLSKRTALYTSLGYIKNSGTSAIAIDAGGSVGAGKNQLGVMT 365 K S N L + TY+LS RT LY LG + + +++ A GA Q G Sbjct: 339 VEKASRN---LLIVGATYALSTRTNLY--LGVDRATLGGFVSLTA----GAKTRQTGTSI 389 Query: 366 GIRHTF 371 GI H F Sbjct: 390 GINHMF 395 >gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinobacterium sp. Marseille] Length = 364 Score = 99.0 bits (245), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 120/397 (30%), Positives = 161/397 (40%), Gaps = 65/397 (16%) Query: 7 LRAVALAAAACATYAGGTGAALAQSSVTIYGIIDTGVVYTTNANANGDSVFKMPSLTGTF 66 ++ LA A +AG AA AQSSVT+YGI+D G + + N G G Sbjct: 1 MKKSLLALAVLGAFAG---AASAQSSVTVYGIVDLGFAHVDDGNPAGSK--NGIDSGGQS 55 Query: 67 PSRIGFKGTEDLGGGLQALFVLE----------------------NGFAPDTGAMGQGNR 104 SRIGFKGTEDLG GL+ALF LE G A + G Sbjct: 56 ASRIGFKGTEDLGNGLKALFQLEATLQADTGAGFGAAAAPATGFNAGVANNAGG------ 109 Query: 105 LFGRQSYVGLK-GNWGQISLGRQVNMTYLSQLKTDVLGPNIFAIGSIDNYLPN------- 156 F R + VGL+ +G + LGRQ ++ + + D G +G+I N Sbjct: 110 -FNRFATVGLQSAAFGTVLLGRQTSVIKDAYDQIDPFGDGG-TVGAISTVFFNGVLAGDY 167 Query: 157 ARSDNAIGYL-GSFSGFTLGATYSFGRDAAGPAGPAATNCPGEVAGNSKACRQVTALLGY 215 R N+ Y SF GF GA Y FG PG+ NS LGY Sbjct: 168 GRISNSAKYQSNSFGGFKFGAAYGFGE------------TPGDTGANSNYGLG----LGY 211 Query: 216 DGKGWGVTSSYDILYGNTGASNGLTSSDNKDQRVTLNGYFMIGDVKIGGGVVDRRTR-AA 274 V +Y +T A+ + ++ K + L + G VK+ G D + + Sbjct: 212 ANGPLNVQFAYHNQDRSTVANPSVQQAEGK--LMLLGATYDFGVVKLHGAYGDTKLENSV 269 Query: 275 ANTNTDSDLYYLGVSYPLSTALVLDAQVSRLDVKNSPNDVTLSVARLTYSLSKRTALYTS 334 ANT Y LGVS P+ + + + + D +Y LSKRT LYT Sbjct: 270 ANTEVKYRNYMLGVSAPVGPGTIFASYTANDNRSVDNADAKKFAISYSYDLSKRTNLYTG 329 Query: 335 LGYIKNSGTSAIAIDAGGSVGAGKNQLGVMTGIRHTF 371 N S I ++AG VG + V GIRH F Sbjct: 330 YSKTSNDDGSRIGLNAGAPVGESASIFNV--GIRHKF 364 >gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Marseille] Length = 326 Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 110/378 (29%), Positives = 164/378 (43%), Gaps = 70/378 (18%) Query: 7 LRAVALAAA-ACATYAGGTGAALAQSSVTIYGIIDTGVVYTTNANANGDSVFKMPSLTGT 65 ++ +ALAA AC T A+ AQSSV +YG+ID + Y G + + +T + Sbjct: 6 MQGLALAAMLACGT------ASQAQSSVQVYGLIDVALAYDKQPGKAGVTGVENGKMTTS 59 Query: 66 FPSRIGFKGTEDLGGGLQALFVLENGFAPDTGAMGQ--GNRLFGRQSYVGLKGNWGQISL 123 + +G KG+EDLGGGL +F LE+ F DTG+ G+ G+ + R SYVGL+G +G + L Sbjct: 60 Y---LGLKGSEDLGGGLSTIFALESYFRADTGSNGRFDGDGFWTRSSYVGLQGRFGSVRL 116 Query: 124 GRQVNMTYLSQLKTDVLGPNIFAIGSIDNYLP------NARSDNAIGYLG-SFSGFTLGA 176 GR ++S L + G + SI +Y ++ ++I Y+ +FSG T+ Sbjct: 117 GRNSVPLFISTLLFNPFGDSFGYSPSIRHYFASGTVTGDSGWSDSIAYVSPNFSGLTVNL 176 Query: 177 TYSFGRDAAGP---AGPAATNCPGEVAGNSKACRQVTALLGYDGKGWGVTSSYDILYGNT 233 + G GP T P + + R+ A+ D W + SSYD Sbjct: 177 IAAAGEGNGGPNVGGSVLYTKGPLGLTAVYQRVRKGAAIA--DTTTWQLGSSYDF----- 229 Query: 234 GASNGLTSSDNKDQRVTLNGYFMIGDVKIGGGVVDRRTRAAANTNTDSDLYYLGVSYPLS 293 + + G VK +A + + L LGV+ PL Sbjct: 230 ---------------DVVKVFAQYGQVK----------NVSAQPDIEYKLTDLGVAIPLG 264 Query: 294 TALVLDAQVSRLDVKNSPNDVTLSVARLTYSLSKRTALYTSLGYIKNSGTSAIAIDAGGS 353 VL A LD TLS+ Y+LSKRT +Y L D + Sbjct: 265 GGKVL-AAYGLLDPVVGAKRETLSLG-YDYNLSKRTDVYLVL-----------MRDELDA 311 Query: 354 VGAGKNQLGVMTGIRHTF 371 + AGK+ + GIRH F Sbjct: 312 LSAGKS---LAVGIRHRF 326 >gi|152981718|ref|YP_001352190.1| porin [Janthinobacterium sp. Marseille] Length = 364 Score = 71.6 bits (174), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 60/147 (40%), Positives = 79/147 (53%), Gaps = 20/147 (13%) Query: 4 KSTLR---AVALAAAACATYAGGTGAALAQSSVTIYGIIDT---GVVYTTNANANGDSVF 57 K+TLR VA AACA A+AQ+SV + G++D V Y+ +A SV Sbjct: 5 KNTLRKLQCVAALGAACAL------PAMAQTSVQVTGLVDNFIGSVKYS--GDAGRSSVV 56 Query: 58 KMPSLTGTFPSRIGFKGTEDLGGGLQALFVLENGFAPDTGAMGQ--GNR-LFGRQSYVGL 114 +T S GFKGTEDLGGGL+A F L + F DTG G+ GN F R + VGL Sbjct: 57 NSGGMT---TSWFGFKGTEDLGGGLKAKFNLTSFFRADTGGAGRFDGNETFFSRDANVGL 113 Query: 115 KGNWGQISLGRQVNMTYLSQLKTDVLG 141 G +G+ISLGR + +L + + G Sbjct: 114 IGKFGEISLGRDLAPHFLPSILFNPFG 140 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 790,538 Number of extensions: 33622 Number of successful extensions: 129 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 9 Length of query: 371 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 286 Effective length of database: 906,776 Effective search space: 259337936 Effective search space used: 259337936 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)