BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3892.p
         (260 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981351|ref|YP_001352423.1| IclR family transcriptional reg...    83   1e-17
gi|152980799|ref|YP_001354172.1| IclR family transcriptional reg...    69   3e-13
gi|152981479|ref|YP_001355355.1| IclR family transcriptional reg...    61   9e-11

>gi|152981351|ref|YP_001352423.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 258

 Score = 83.2 bits (204), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 129/253 (50%), Gaps = 7/253 (2%)

Query: 9   ALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYAD-S 67
           A TD + +  + R +A++ A +     +++ ++S  TG+  +   R L+ L    + D S
Sbjct: 5   ADTDKTSIQVIERMVALLDALALYPDPVSLKELSSVTGLHPSTAHRILNDLVIKRFVDRS 64

Query: 68  DVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDNEVLYVARSA 127
           +   + L  ++L LG    S   +  +A   + ++ R   ++ +L+V  ++E++Y+ R+ 
Sbjct: 65  EPGTYRLGMRLLELGNIVKSRLDVREAALDLMRHLHRKTNQTVNLSVRQNDEIIYIDRAF 124

Query: 128 TSRV-MSVALNTGSRLPAYCTSLGRAMLAHLPDDQLKAYFDKVKLRALTDKTVVSQKRLR 186
           + R  M V    G R P + TS G+  L+      ++AY  +  L      ++   K+L 
Sbjct: 125 SERSGMQVVRAVGGRAPLHLTSTGKLFLSIDEPRMVQAYATRTGLAGHNKNSITDLKKLE 184

Query: 187 DILAGVRENGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEDILP 246
             L  VR +GYA  +EELE+G+R +A  +   +G ++A L++ A A R     ++E+ L 
Sbjct: 185 GELNQVRLHGYARDNEELELGVRCMAAGIHDDTGRLIAGLSISAPADR-----LQEEWLA 239

Query: 247 VLLRGAQELSVLL 259
            L+  A+++S  L
Sbjct: 240 DLMDTAKQISAAL 252


>gi|152980799|ref|YP_001354172.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 352

 Score = 68.9 bits (167), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 14/225 (6%)

Query: 16  MTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGY--ADSDVNNFS 73
           + S+  G  ++     + R L + QI++  G+  A V   L + + +G    ++D  ++ 
Sbjct: 91  IQSIEIGFRILDVLRTAGRPLPLRQIAESAGMAVANVHYYLVSFQAVGVIRQEADSGHYG 150

Query: 74  LRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDN--EVLYVARSATSRV 131
           L P  L LG + L    +  +A+P +  ++ T+G +  L V  +    ++Y     TSR 
Sbjct: 151 LGPYALKLGMAALEQFDVFTAARPVMAELAATVGHTVFLGVWGNRGPTIVYRIEGGTSRP 210

Query: 132 MSVALNTGSRLPAYCTSLGRAMLAHLP--------DDQLKAYFDKVKLRALTDKTVVSQK 183
           + + L  GS LP   ++LGR  LAHLP          +LK   D     + +D    S  
Sbjct: 211 I-LELRVGSVLPLLNSALGRNFLAHLPRTITGELLKQELKINLDDKHAPSHSD-LPQSAA 268

Query: 184 RLRDILAGVRENGYAVIDEELEVGLRSIAVPVRGASGNVLAALNV 228
            +  +LA V+ENG +   + L     S++ PV    G ++AA+ +
Sbjct: 269 DIEKMLASVKENGLSRCRDALLPHFTSLSAPVFDHLGEMIAAITL 313


>gi|152981479|ref|YP_001355355.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 257

 Score = 60.8 bits (146), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 9/197 (4%)

Query: 67  SDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDNEVLYVAR- 125
           S    ++L P +  LG +      L     P L  ++++ G++  L V   N+ + ++R 
Sbjct: 64  SGSKRYTLGPVMFELGLAATHQFNLRDICAPVLERLAQSTGDTSFLFVRSGNDAICLSRI 123

Query: 126 SATSRVMSVALNTGSRLPAYCTSLGRAMLAHLPDDQLKAYFDKVKLRALTDKTVVSQKRL 185
                + +  +  GSR P   ++ G A+L+ LP  + +    +V+ R     +V     +
Sbjct: 124 QGNYPIQTPVVPVGSRQPLGVSAGGLALLSCLPKAEAEQILREVEPRL----SVYENLDI 179

Query: 186 RDILAG---VRENGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEE 242
            D++       E GYA I      G+ ++ +P+R A+G  +AA+ V    AR++  ++ E
Sbjct: 180 NDVIDHYNRTHELGYAWISNHAVPGVSALGLPIRNAAGTAVAAITVATTLARMTATRVNE 239

Query: 243 DILPVLLRGAQELSVLL 259
            ILP+L   AQ+++ LL
Sbjct: 240 -ILPILREAAQDVARLL 255


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.132    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 528,562
Number of extensions: 20038
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 3
Length of query: 260
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 179
Effective length of database: 921,564
Effective search space: 164959956
Effective search space used: 164959956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)