BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3891.p
         (224 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979931|ref|YP_001353171.1| 3-oxoacid CoA-transferase subun...   219   7e-59

>gi|152979931|ref|YP_001353171.1| 3-oxoacid CoA-transferase subunit
           A [Janthinobacterium sp. Marseille]
          Length = 232

 Score =  219 bits (559), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 107/224 (47%), Positives = 158/224 (70%), Gaps = 3/224 (1%)

Query: 2   INKISDSLEQAVADI-HDGATIMIGGFGNAGMPSALIDALIAQGARDLTIVNNNAGNGET 60
           +NK+      A+ADI  DG TI +GGFG  G+P ALI AL   G ++LT ++NNAG  + 
Sbjct: 1   MNKVYPDAASALADIVRDGQTIAVGGFGLCGIPEALIAALRDSGVQNLTAISNNAGVDDA 60

Query: 61  GLAALLKTKRVRKIICSFPRQADSQVFDALYRSGEIELELTPQGNLAERIRAAGAGIGGF 120
           GL  LL+T++++K+I S+    +++ F+  + +GE+ELE TPQG LAE++RA GAGI  F
Sbjct: 61  GLGQLLQTRQIKKMIASYV--GENKEFERQFLAGELELEFTPQGTLAEKLRAGGAGIPAF 118

Query: 121 FSPTGYGTMLAEGRETREINGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPI 180
           F+ TG GT++AEG++ RE +G  YV+E  + AD +++KA   D+ GNLVYR+TARNF P 
Sbjct: 119 FTKTGVGTVVAEGKDVREFDGEQYVMERALVADVSIVKAYMADKAGNLVYRRTARNFNPN 178

Query: 181 MAMAAKCTIAQVNDVVELGQLDPENIITPGIFVQRIVQTKEAQQ 224
           +AMA K T+ +V  +VE+G++DP+++ TPGIF+ RIV     Q+
Sbjct: 179 VAMAGKITVVEVEKLVEIGEIDPDHVHTPGIFIHRIVLNAHPQK 222


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 484,051
Number of extensions: 19156
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 144
Effective length of database: 925,261
Effective search space: 133237584
Effective search space used: 133237584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)