BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3888.p (288 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980537|ref|YP_001353497.1| ABC-type branched-chain amino a... 124 5e-30 gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC t... 119 3e-28 gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC t... 100 1e-22 gi|152980464|ref|YP_001352469.1| branched-chain amino acid trans... 94 9e-21 gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC t... 90 2e-19 >gi|152980537|ref|YP_001353497.1| ABC-type branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 538 Score = 124 bits (312), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 105/299 (35%), Positives = 168/299 (56%), Gaps = 19/299 (6%) Query: 4 NFIGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGY---VCVTLLNR--- 57 F+G LF GI+ GS+L L ++GL++T G+M IN+AHG M+G Y VC + + Sbjct: 241 EFVGKLFYGISLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFP 300 Query: 58 --MGVPFLVTLPLAFLAAAIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQW 115 + LV LP AF+ AA VG+ LER + R LY L+ +L + G++ + + G + Sbjct: 301 EAIDAYLLVALPAAFIVAAAVGIALERLVIRWLY-GRPLETLLCTWGISLILMQGVRSIF 359 Query: 116 GPTQQPVVLPDWLRGQVSLLGLDVGAY-RVFLIGVVVIVTVALGLLIERTRFGAQIRASV 174 G V P W+ G V++LG V +Y R+ +I + V +A+ L++ +TR G +RA + Sbjct: 360 GAQNVEVANPSWMSGGVTVLGSLVLSYNRIVIIFFALFVVLAVWLILNKTRLGLFVRAVM 419 Query: 175 DNQVAAAGLGINVSRVFSLTFALGSGLAGLGGGLGIDVLG-LDPSFPVKYMVYFLLVVAV 233 N+ AA +G++ ++ +TF LG G+AGL GG+ + LG + P Y+V +VV + Sbjct: 420 QNRRMAACVGVSTGKIDMMTFGLGCGIAGL-GGVALSQLGNVGPDLGQGYIVDSFMVVVL 478 Query: 234 GGAGTIKGPLLAAILLGVFDVAGKYYVPEIGAFVIYGLMVVLLILF----PAGLMRRRG 288 GG G + G ++AA LG + K+ P GA + ++V +I+F P GL +G Sbjct: 479 GGVGQLAGTVIAAFGLGEVN---KFLEPVAGAVLAKIAILVFIIIFIQKRPQGLFALKG 534 >gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 293 Score = 119 bits (297), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 148/291 (50%), Gaps = 13/291 (4%) Query: 2 LGNFIGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLN---RM 58 + F +L GI ++LFL++ GL + G+ INLA G+ LG Y + + + Sbjct: 1 MAPFFNILLAGIFQAAVLFLVASGLQLIFGVQRIINLACGSIYALGAYFGIFVTSWALSK 60 Query: 59 GVPFLVTLPLAFLAAAIV----GLVLERSLYRRLYKASHLDQVL--FSIGLTFMAVAGAT 112 G+P + P L A IV G+ LER L R +Y Q+L F++ L F V Sbjct: 61 GLPVHL-FPFVLLGAGIVIGLIGIPLER-LIRTIYNRPESFQLLLTFAVMLMFQDVLRFF 118 Query: 113 WQWGPTQQPVVLPDWLRGQVSLLGLDVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRA 172 W P Q P V + G +S G+ + Y V +I V V + + + + +T+ G +RA Sbjct: 119 WGADPQQLPNVSMTF--GTMSAFGVSMPTYNVMVIAVAVTLAIGMAYFLGKTKTGKILRA 176 Query: 173 SVDNQVAAAGLGINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPSFPVKYMVYFLLVVA 232 + +N+ +A +GINV+RV+ + F LG+ L +GG L I V+ +V VV Sbjct: 177 TAENRETSAAMGINVTRVYVMVFTLGTMLGTIGGALVIPNAAASLEMGVELVVEAFAVVV 236 Query: 233 VGGAGTIKGPLLAAILLGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGL 283 +GG G++KG + A+++G+ Y PE IY +++ +LI PAGL Sbjct: 237 IGGLGSMKGAAVGALIVGLIRALSAMYYPEAEILAIYAIVLAVLIWKPAGL 287 >gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 315 Score = 100 bits (248), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 136/247 (55%), Gaps = 3/247 (1%) Query: 9 LFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNRMGVPFLVTLPL 68 L +G++YG LLF++S GL++ MM +N AH +F M+G Y ++ N +G F L L Sbjct: 8 LLNGLSYGLLLFMLSSGLTLIFSMMGVLNFAHASFYMIGAYFAYSISNAIG--FWPALVL 65 Query: 69 AFLAAAIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLPDWL 128 A LA ++G ++ER R ++K + ++LF+ GL+++ V WG P +P L Sbjct: 66 APLAVGLLGALVERFGLRAVHKYGKIPELLFTFGLSYVIVELVQLIWGRVAVPYSIPPEL 125 Query: 129 RGQV-SLLGLDVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGLGINV 187 +G + +L YR F++ V +++ A+ + RTR G I+A++ + LG NV Sbjct: 126 QGSLFTLYTTTFPIYRGFMMLVAILMLAAIYFTLTRTRIGLVIQAALTHPQMVEALGHNV 185 Query: 188 SRVFSLTFALGSGLAGLGGGLGIDVLGLDPSFPVKYMVYFLLVVAVGGAGTIKGPLLAAI 247 RVF FA G LAGL G +G + +P+ +VV VGG G++ G LLA++ Sbjct: 186 PRVFMWVFAGGCALAGLAGVIGGNAFVTEPNMAHALGSIIFVVVVVGGMGSLGGALLASL 245 Query: 248 LLGVFDV 254 L+GV Sbjct: 246 LIGVLQT 252 >gi|152980464|ref|YP_001352469.1| branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 290 Score = 94.0 bits (232), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 82/282 (29%), Positives = 135/282 (47%), Gaps = 10/282 (3%) Query: 11 DGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNRMGVPFLVTLPLAF 70 + + GS L+ +GL++ G+M +N AHG LG YV ++ G+ F +L +A Sbjct: 10 NALVLGSTYALLGIGLTLIFGIMRVVNFAHGELYALGAYVAYGVVAMFGMNFFGSLIVAA 69 Query: 71 LAAAIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLPDWLRG 130 + + G +E L RR + + +L IG+ + WG + V P + + Sbjct: 70 IVGFLFGTAIEYFLLRRRDLKAIDEVMLIMIGVMIIMQNAELLMWGGVAKSVPSP-FSQE 128 Query: 131 QVSLLGLDVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGLGINVSRV 190 + + V R+F++ + + V LLIER+R G +RA+ ++ AA +G+NVS V Sbjct: 129 PIVWGAISVSPIRLFVLVTALALLVIFYLLIERSRLGLAMRATFQDKDAAKIVGVNVSHV 188 Query: 191 FSLTFALGSGLAGLGGGLGIDVLGLDPSFPVKYMVYFLLVVAVGGAGTIKGPLLAAILLG 250 ++LTFALGS LA + G L V + P+ + +V +GG G + G L +L Sbjct: 189 YTLTFALGSCLASVAGALLAPVFVVTPTMGDLASLKAFAIVILGGLGNLPGAALGGFILA 248 Query: 251 VFDVAGKYYVPE-----IGAFVIYGLMVVLLILFPAGLMRRR 287 + + G Y+ +G VI +M I P GL R Sbjct: 249 IVEEFGAGYISTAYRDALGFLVILAVM----IFRPQGLFTIR 286 >gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 309 Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 90/314 (28%), Positives = 159/314 (50%), Gaps = 44/314 (14%) Query: 5 FIGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNRMG----- 59 FI + +G+ GS+ L+++G ++ G++N IN AHG M+G +T+L + Sbjct: 4 FIQQIINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAMAGLTILKMLNTVAPD 63 Query: 60 VPFLVTLPLAFLAA----AIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQW 115 +P +V L +A L A V +++ER YRRL A L ++ +IG++ + A W Sbjct: 64 LPGIVKLIIAILGAIPVCVAVNVLIERVAYRRLRNAPRLAPLITAIGVSILLQTLAMMIW 123 Query: 116 GPTQQPVVLPDWLRGQ-VSLLGLDVGAYRVFLIGVVVIVTVALGLL---IERTRFGAQIR 171 G + P+ P + + + ++G + +V L+ ++ VA+GLL IE+TR G +R Sbjct: 124 G--RSPIPFPQEMPTEPLHIMGALISPTQVMLL---ILAAVAMGLLVLLIEKTRMGRAMR 178 Query: 172 ASVDNQVAAAGLGINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPSFPVKYMVYFL--- 228 A+ +N A +G++ +RV +TFA+G+ LA V+ ++ + F+ Sbjct: 179 ATSENPRVAGLMGVDSNRVIVMTFAIGAILA-----AIAGVMWAANYSSAQFAMGFVPGL 233 Query: 229 ---LVVAVGGAGTIKGPLLAAILLGVFDVAGKYYV------------PEIGAFVIYGLMV 273 +GG G I G +L ILLG+ + G Y+ +I AFV+ ++ Sbjct: 234 KAFSAAVLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVV---LI 290 Query: 274 VLLILFPAGLMRRR 287 ++L L P+G+M R Sbjct: 291 IVLTLRPSGIMGER 304 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.330 0.148 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 596,931 Number of extensions: 23001 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 11 Length of query: 288 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 206 Effective length of database: 917,867 Effective search space: 189080602 Effective search space used: 189080602 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)