BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3886.p (257 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 166 1e-42 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 164 4e-42 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 158 3e-40 gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC t... 148 3e-37 gi|152980928|ref|YP_001351786.1| branched-chain amino acid trans... 148 4e-37 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 166 bits (420), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 99/264 (37%), Positives = 156/264 (59%), Gaps = 9/264 (3%) Query: 1 MNPTSSTADTTLRTENLSKRWGSFVANSEVSLTFTPGARHALIGPNGAGKTTFINLLTGG 60 M+ T++TA L + ++ R A S G +LIGPNGAGKTT N+++G Sbjct: 1 MSQTNTTA--ALELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGY 58 Query: 61 FAPSSGKVWFGGEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVV--LAIQERRGLQ 118 P+SG+V G DIT +A + + G+ R+FQ ++F+ TV E+++ L ++ + G+ Sbjct: 59 MKPTSGRVKLFGHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVL 118 Query: 119 YKWYQTVASQSEVVD---EAMALLASLRLEQEANSITRSLAYGKQRLVEIALALATRPKV 175 +T + E D +A LLA L L AN++ +L+YG+QRL+ + LALA +PKV Sbjct: 119 QALLRTQKFRREEADLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKV 178 Query: 176 LLLDEPAAGIPAAESRELFEVIAQLPRD-VTIVFIEHDMGLVFRFAERITVLVGGKVLVE 234 LLLDEPAAG+ +E+ E++ ++ + VT++ +EHDM +V ++ I VL G+++ Sbjct: 179 LLLDEPAAGLNPSETEAFKEMVRRIGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIAT 238 Query: 235 GTPAEIAADQRVKEVYLGEA-EHA 257 G+P+EI D V YLG EHA Sbjct: 239 GSPSEIQNDPEVIRAYLGSGIEHA 262 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 164 bits (416), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 99/247 (40%), Positives = 145/247 (58%), Gaps = 6/247 (2%) Query: 12 LRTENLSKRWGSFVANSEVSLTFTPGARHALIGPNGAGKTTFINLLTGGFAPSSGKVWFG 71 L +SKR+G A S+V++ G + LIGPNGAGKTTF N++TG + +G Sbjct: 7 LNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFELA 66 Query: 72 GEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVVLA--IQERRGLQYKWYQTVAS-- 127 G+ + A H+ K G+ RTFQ LF +T LE+V++ ++ +GL + A+ Sbjct: 67 GKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAARR 126 Query: 128 -QSEVVDEAMALLASLRLEQEANSITRSLAYGKQRLVEIALALATRPKVLLLDEPAAGIP 186 ++E+ AM LL + + + A R L+YG QR +EIA ALAT P++L LDEPAAG+ Sbjct: 127 EEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMN 186 Query: 187 AAESRELFEVIAQLPRD-VTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADQR 245 A E L E++ ++ + TI+ IEHD+ L+ +RITVL GK + EG PA++ D Sbjct: 187 ATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQKDPA 246 Query: 246 VKEVYLG 252 V E YLG Sbjct: 247 VIEAYLG 253 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 158 bits (400), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 137/244 (56%) Query: 12 LRTENLSKRWGSFVANSEVSLTFTPGARHALIGPNGAGKTTFINLLTGGFAPSSGKVWFG 71 L + KR+G+ SL G R ALIGPNGAGK+T NL++G F SSG + Sbjct: 6 LELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSGDILLN 65 Query: 72 GEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTVASQSEV 131 G I ++ +RG++R+FQI +F L+V E++ A+ G +Y ++Q + +V Sbjct: 66 GSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGYRYSFWQRLNGLQDV 125 Query: 132 VDEAMALLASLRLEQEANSITRSLAYGKQRLVEIALALATRPKVLLLDEPAAGIPAAESR 191 A ++ + L + N L+Y +QR +EI + +A +VLLLDEP AG+ +ES Sbjct: 126 NQRAEQVMEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEPTAGMSRSESD 185 Query: 192 ELFEVIAQLPRDVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADQRVKEVYL 251 E+I ++ T++ +EHDM +VF A+RI VLV G+++ TP I + V++ YL Sbjct: 186 AAVELIRKISAGKTLLMVEHDMDVVFGLADRIAVLVYGEIIACDTPDNIRNNPLVQQAYL 245 Query: 252 GEAE 255 G E Sbjct: 246 GTVE 249 >gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC transporter, ATP-binding protein [Janthinobacterium sp. Marseille] Length = 288 Score = 148 bits (373), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 147/244 (60%), Gaps = 5/244 (2%) Query: 12 LRTENLSKRWGSFVANSEVSLTFTPGARHALIGPNGAGKTTFINLLTGGFAPSSGKVWFG 71 L E+++ + F A ++++L + G +IGPNGAGKTT ++++TG P+SG +FG Sbjct: 46 LYLEDITVSFDGFKAINKLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRPTSGTAFFG 105 Query: 72 GE-DITALAQHERVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTVASQSE 130 D+T L ++E G+ R FQ T+F TV E++ LA++ + ++ + + SE Sbjct: 106 QSIDLTKLTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKTTLFARL--NSE 163 Query: 131 VVDEAMALLASLRLEQEANSITRSLAYGKQRLVEIALALATRPKVLLLDEPAAGIPAAES 190 + + +L +RL + + I L++G+++ +EI + L P+++LLDEP AG+ AE+ Sbjct: 164 QIGKIEEILKLIRLNGQEHRIAGLLSHGQKQWLEIGMLLMQEPQLILLDEPVAGMSDAET 223 Query: 191 RELFEVIAQLPRDVTIVFIEHDMGLVFRFA--ERITVLVGGKVLVEGTPAEIAADQRVKE 248 E++ +L +I+ +EHDMG V A +++TVL G VL EG+ ++ AD+RV E Sbjct: 224 ARTAELLNELRGKHSIMVVEHDMGFVEEIAQGDKVTVLHEGSVLAEGSMQQVQADERVIE 283 Query: 249 VYLG 252 VYLG Sbjct: 284 VYLG 287 >gi|152980928|ref|YP_001351786.1| branched-chain amino acid transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 255 Score = 148 bits (373), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 140/254 (55%), Gaps = 3/254 (1%) Query: 6 STADTTLRTENLSKRWGSFVANSEVSLTFTPGARHALIGPNGAGKTTFINLLTGGFAPSS 65 ST D L +S+ +G F+A V L+ + G +++GPNGAGKTT +N+LTG P++ Sbjct: 2 STNDVLLHATQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTT 61 Query: 66 GKVWFGGEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTV 125 G V F G +I + + RG+ R FQ+ ++F LTV E++ ++ ++ + + Sbjct: 62 GHVNFDGANIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNQRWNGFGHL 121 Query: 126 ASQSEVVDEAMALLASLRLEQEANSITRSLAYGKQRLVEIALALATRPKVLLLDEPAAGI 185 ++ D + + L ++ SL +G+++L+++A A A PKV+LLDEP AG+ Sbjct: 122 FGSRKINDIVVRTADAFGLSPWLDTKGGSLPHGRRKLLDVASAFALHPKVMLLDEPTAGV 181 Query: 186 PAAESRELFEVIAQLPRDV---TIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAA 242 A+ + E + + + + I+ +EHDM LV R++ RI + GGK + + E A Sbjct: 182 STADKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIVAMQGGKKIADLPRDEFFA 241 Query: 243 DQRVKEVYLGEAEH 256 ++ V + +G+ H Sbjct: 242 NEEVVSIVVGKGAH 255 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 571,800 Number of extensions: 23338 Number of successful extensions: 291 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 203 Number of HSP's successfully gapped: 58 Length of query: 257 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 176 Effective length of database: 921,564 Effective search space: 162195264 Effective search space used: 162195264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)