BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3885.p (233 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 169 1e-43 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 160 4e-41 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 151 3e-38 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 151 4e-38 gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 145 3e-36 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 169 bits (429), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 140/223 (62%), Gaps = 3/223 (1%) Query: 1 MPELLALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGS 60 M LL + + A YG+S VL + + GE ++LLGRNG G+++ + MG+ G + Sbjct: 1 MSALLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMVAATG-T 59 Query: 61 IRWRGGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTV-VERGGKWDLKKIYEIFP 119 IR++G +I+ +PT++ A GLG+V + R +FP+LSV ++L + + +W +Y +FP Sbjct: 60 IRFKGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGAQAKSRWSADDMYRLFP 119 Query: 120 RLHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVS 179 RL ER+H LSGGEQQMLA+ R LM P ++++DEP EGLAP +V + ++ LV Sbjct: 120 RLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVANFLQELV- 178 Query: 180 DEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLAD 222 G+SV+++EQ +AL ++QR V+ G++V Q L AD Sbjct: 179 QRGVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQAD 221 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 160 bits (406), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 136/227 (59%), Gaps = 5/227 (2%) Query: 4 LLALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGSIRW 63 +L ++++ YG + L +S + +G+ L+LLGRNGVGKT+LL LMG+ + G++ Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSL 60 Query: 64 RGGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHL---TVVERGGKWDLKK--IYEIF 118 G DI ++ H+RA G+ +VPQ R +F L+VEE+L + G K + K +YE+F Sbjct: 61 DGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGMATKSGKKASVIKGEVYELF 120 Query: 119 PRLHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLV 178 P L E H G LSGG+QQ LAIARAL+ P +++LDEP EG+ P I++++ +VI L Sbjct: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 Query: 179 SDEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGEK 225 + +++ EQ+ A L +VL RG +V + Q + D K Sbjct: 181 ERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEMDDDNVK 227 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 151 bits (382), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 138/228 (60%), Gaps = 15/228 (6%) Query: 5 LALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGSIRWR 64 L + +T GY + VL DVS + G+ +LG NG GK++L+ +++GLT G I W Sbjct: 4 LIVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWG 63 Query: 65 GGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHL----------TVVERGGKWDLKKI 114 G ++ TH +G+ +P+ R +FP ++V E+L TVV + L ++ Sbjct: 64 GKNLAGEKTHNIIASGISCIPEGRKVFPRMTVAENLALGAFLESSSTVV----RDRLARV 119 Query: 115 YEIFPRLHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVI 174 YEIFPRL ER + +SGGEQ M++I R LM P +L++DEP GL+P+ V+E KVI Sbjct: 120 YEIFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENFKVI 179 Query: 175 RRLVSDEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLAD 222 ++ ++ G++V++VEQ+AR L+++ VL +GR++ +++L ++ Sbjct: 180 KQ-INALGITVLLVEQNARQTLAISHYGYVLSQGRVMAQGTAEALSSN 226 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 151 bits (381), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 135/228 (59%), Gaps = 7/228 (3%) Query: 3 ELLALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGSIR 62 +L ++++T YG + + +S +HEGE + L+G NG GK++ L + GL + GSIR Sbjct: 15 NMLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGSIR 74 Query: 63 WRGGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTV--VERGGKW----DLKKIYE 116 G + + G+ P+ R +FP L+V E++ + R K D++++++ Sbjct: 75 MNGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRKDKAKVRDDMERMFD 134 Query: 117 IFPRLHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRR 176 FPRL ER + LSGGEQQMLAIARALM P +++ DEP GLAP IV+++ +IR Sbjct: 135 KFPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIFSLIRE 194 Query: 177 LVSDEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGE 224 + S EG +V++VEQ+A AL++ R +L+ G IV S + A+ E Sbjct: 195 IRS-EGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPE 241 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 145 bits (365), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 137/228 (60%), Gaps = 11/228 (4%) Query: 4 LLALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGL---TRMHGGS 60 +L + + YG ++ V +H+GE + L+G NG GKT+ L + G R+ G Sbjct: 5 VLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRVEG-H 63 Query: 61 IRWRGGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHL-----TVVERGG-KWDLKKI 114 I + G I + + + L VP+ R +F +S++E+L T ++ G D+ K Sbjct: 64 IEYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRDDKDGIAADIDKW 123 Query: 115 YEIFPRLHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVI 174 + +FPRL ER M LSGGEQQMLA+ARALM P +LLLDEP GL+PI+V+++ +VI Sbjct: 124 FGVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMVEKIFEVI 183 Query: 175 RRLVSDEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLAD 222 R VS +G+++++VEQ+A++AL RA V++ G + D+Q +L+D Sbjct: 184 RT-VSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSD 230 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 549,582 Number of extensions: 22817 Number of successful extensions: 251 Number of sequences better than 1.0e-08: 55 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 59 Length of query: 233 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 153 Effective length of database: 925,261 Effective search space: 141564933 Effective search space used: 141564933 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)