BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3884.p (314 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981444|ref|YP_001353363.1| vanB family oxidoreductase/oxyg... 222 2e-59 gi|152981490|ref|YP_001354196.1| vanB family oxidoreductase/oxyg... 185 4e-48 gi|152981877|ref|YP_001355367.1| hypothetical protein mma_3677 [... 177 6e-46 gi|152981503|ref|YP_001352912.1| vanillate monooxygenase, beta s... 176 2e-45 gi|152981483|ref|YP_001351917.1| vanB family oxidoreductase/oxyg... 176 2e-45 >gi|152981444|ref|YP_001353363.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 319 Score = 222 bits (566), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 129/317 (40%), Positives = 173/317 (54%), Gaps = 4/317 (1%) Query: 1 MNVIIDSITQDTADIRVFLLKSADGSPLPTYKAGAHIDLTLGNGLVRQYSLCCRNPSGEN 60 + V + ITQ+ DI+ F L+S G LP + G+HID+ +G GL+RQYSLC + Sbjct: 4 LTVRVHKITQEACDIKSFELRSVSGEALPAFTPGSHIDVHIGEGLIRQYSLCNGPDEPDR 63 Query: 61 YRIAVKRETNSRGGSSWLHEHAHPGTPLQAGIPRSAFGLTDAPGPHLLLAGGIGITPLLA 120 Y IAVK+E SRGGS +HE G ++ PR+ F L + GP+LLLAGGIG+TP+L+ Sbjct: 64 YLIAVKKEVTSRGGSQAMHESIREGDQIKISAPRNNFPLEQSQGPYLLLAGGIGVTPVLS 123 Query: 121 MAYALLADGRAFTLTCFARDESMLPLRNELHEGPLAIHTRIFCGLDEVATRTGIAEVMAA 180 MA LLA G F L F R + L E + L+ R + +++ Sbjct: 124 MARHLLAQGVEFELQYFTRSIAHTAFHALLSEPEFQGRIKFHYALEPEGLRAYLRKLLWH 183 Query: 181 HAQ-AQVYTCGPPAFMVAVGELASARYGADHFHQESFQPAAASAAGTDTPFMIRI-NDGR 238 + + +Y CGP FM V A+A + + H E F S AG F +R+ G Sbjct: 184 YPENGSLYLCGPRVFMDLVESTAAATWPPEAVHLEYFSADPLSLAGEQESFEVRLARTGG 243 Query: 239 EITVPAGQSALASLQEAGIDLACSCEVGVCGTCKVAVRQGQPDHRDSVLS-AEEKACGKW 297 VPAG +L GI + SCE GVCGTC V +G PDHRD LS AE+K+C K Sbjct: 244 TYAVPAGMPITEALAAHGIHIDTSCEQGVCGTCLTGVLEGTPDHRDVYLSDAEKKSCDK- 302 Query: 298 FMPCVSRSTSDVLVLDI 314 MPCVSR+ S +LVLD+ Sbjct: 303 IMPCVSRAKSPLLVLDL 319 >gi|152981490|ref|YP_001354196.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 327 Score = 185 bits (469), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 124/321 (38%), Positives = 164/321 (51%), Gaps = 9/321 (2%) Query: 2 NVIIDSITQDTADIRVFLLKSADGSPLPTYKAGAHIDLTLGNGLVRQYSLCCRNPSGENY 61 V + +I + IR F L G LP AGAHID+ L NGLVRQYSL S + Y Sbjct: 8 QVWVRAIRIEAEQIRSFELCPLAGERLPAAAAGAHIDVHLPNGLVRQYSLLHPGES-KAY 66 Query: 62 RIAVKRETNSRGGSSWLHEHAHPGTPLQAGIPRSAFGLTDAPGPHLLLAGGIGITPLLAM 121 I V R+ SRGGSS+LHE PG L +PR+ F L + +L+AGGIGITP+ +M Sbjct: 67 MIGVNRDPVSRGGSSYLHEAVKPGDVLTISVPRNNFPLHEEAAHSVLIAGGIGITPIFSM 126 Query: 122 AYALLADGRAFTLTCFARDESMLPLRNELHEGPLAIHT-RIFCGLDEV--ATRTGIAEVM 178 L GRA+TL R E +EL T + D+V +AE++ Sbjct: 127 VQRLNQIGRAWTLYYCTRTEERAAFLDELKTLAATTETGNLHTVFDQVPGNQMLNLAELV 186 Query: 179 ----AAHAQAQVYTCGPPAFMVAVGELASARYGADHFHQESFQ-PAAASAAGTDTPFMIR 233 A HA A + C P ++ + A+A A+ H E F PA AS T + Sbjct: 187 QHSEAEHAGAAHFYCCGPGMLLQGFQQATATVAAERVHVEYFSAPAVASNVAAKTFSVTL 246 Query: 234 INDGREITVPAGQSALASLQEAGIDLACSCEVGVCGTCKVAVRQGQPDHRDSVLSAEEKA 293 G+ +PA QS L L G+ + SC GVCG+C+ AV G+P+HRD+VLSA E+A Sbjct: 247 ARSGQTFQIPADQSILEVLLSKGVSVLSSCREGVCGSCETAVLAGEPEHRDAVLSAAERA 306 Query: 294 CGKWFMPCVSRSTSDVLVLDI 314 + M CVSR L LD+ Sbjct: 307 DNRTMMLCVSRCKGTSLTLDL 327 >gi|152981877|ref|YP_001355367.1| hypothetical protein mma_3677 [Janthinobacterium sp. Marseille] Length = 580 Score = 177 bits (450), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 117/310 (37%), Positives = 169/310 (54%), Gaps = 12/310 (3%) Query: 10 QDTADIRVFLLKSADGSPLPTYKAGAHIDLTLGNGLVRQYSLCCRNPSGENYRIAVKRET 69 +++ + F L+S G LP +AGAHI+L +GLVRQYS+ I VK E Sbjct: 278 KESDGVMAFELRSISGK-LPPMQAGAHINLRTPSGLVRQYSIVNAPTERATLTIGVKLEP 336 Query: 70 NSRGGSSWLHEHAHPGTPLQAGIPRSAFGLTDAPGPHLLLAGGIGITPLLAMAYALLADG 129 +SRGGS+ +H A PGT L+ R+ F L D P +L+AGGIGITPL++MA AL A G Sbjct: 337 DSRGGSASMHASALPGTHLEFVPTRNTFPLLDTPKYPVLIAGGIGITPLVSMAQALHAAG 396 Query: 130 RAFTLTCFARDESMLPLRNEL--HEGPLAIHTRIFCGLDEVATRTGIAEVMAAHAQAQ-V 186 + F L F R + + + + + L +H C E T++ + +V+ +Q Q V Sbjct: 397 KDFRLHYFVRSDEHVSFASRMAAFQDKLVLHAA--CTPQE--TKSILDQVLTQSSQPQIV 452 Query: 187 YTCGPPAFMVAVGELASARYGAD-HFHQESFQPAAASAAGTDTPFMIRIN-DGREITVPA 244 Y CGP + + A D E F+ G PF +++ +G+ ITVP Sbjct: 453 YACGPGPMLTTIRACTQAAGMPDADVRFEIFR--NDKDFGDGKPFTVKLKRNGQTITVPR 510 Query: 245 GQSALASLQEAGIDLACSCEVGVCGTCKVAVRQGQPDHRDSVLSAEEKACGKWFMPCVSR 304 G++ LA+L+ GI + SCE G+CG+C V G P+HRDS L+ +EKA M CVSR Sbjct: 511 GETLLAALKRNGIPVEASCEQGICGSCLTRVSSGVPEHRDSYLTPQEKAANTCMMACVSR 570 Query: 305 STSDVLVLDI 314 + S+ L LD+ Sbjct: 571 AISEELELDL 580 >gi|152981503|ref|YP_001352912.1| vanillate monooxygenase, beta subunit [Janthinobacterium sp. Marseille] Length = 329 Score = 176 bits (446), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 127/328 (38%), Positives = 173/328 (52%), Gaps = 24/328 (7%) Query: 1 MNVIIDSITQDTADIRVFLLKSADGSPLPTYKAGAHIDLTL----GNGLVRQYSLCCRNP 56 + V++ I T I+ F+L S DG+ LP Y AGAHI + + G+ R YSL + Sbjct: 12 ITVVVSEIRALTPTIKAFVLHSTDGTALPAYTAGAHIRVQVILPGGDADERSYSLIDDSV 71 Query: 57 SGE---NYRIAVKRETNSRGGSSWLHEHAHPGTPLQAGIPRSAFGLTDAPGPHLLLAGGI 113 E YRIAV+RE +GGS+++H G+ L P++ F L + ++L+AGGI Sbjct: 72 GSECRSYYRIAVQREAKGKGGSAFMHG-LEVGSHLSIRPPKNDFPLDASARHNVLIAGGI 130 Query: 114 GITPLLAMAYALLADGRAFTLTCFARDESMLPLRNELHEGPLAIHTRIFCGLDEVATRTG 173 GITP+LAMAYAL A GR+F R ++ R+ + A F G D R G Sbjct: 131 GITPILAMAYALQAGGRSFEFHYGTRSPDLMAFRDVVETFRNA--ALYFDGGD---PRRG 185 Query: 174 IA-EVMAAHAQ--AQVYTCGPPAFMVAVGELASAR---YGADHFHQESFQPAAASAAGTD 227 + E + AH VY CGP + AV +A+A+ + DH H E F AA G D Sbjct: 186 LQLEALLAHPANGKHVYVCGPRGLIDAV--IATAKHYGWADDHVHFELFNSPAAQ--GGD 241 Query: 228 TPFMIRIN-DGREITVPAGQSALASLQEAGIDLACSCEVGVCGTCKVAVRQGQPDHRDSV 286 T F + + G+ + VP +S L + AG DL C+ G CG C AV +G PDHRD Sbjct: 242 TAFEVELRASGKTLQVPVDKSILDVILAAGCDLMYDCKRGECGMCATAVLEGIPDHRDYN 301 Query: 287 LSAEEKACGKWFMPCVSRSTSDVLVLDI 314 L +E+A GK CVSR+ S LVLDI Sbjct: 302 LPEDERAAGKVMCICVSRAKSARLVLDI 329 >gi|152981483|ref|YP_001351917.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 321 Score = 176 bits (445), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 136/322 (42%), Positives = 168/322 (52%), Gaps = 12/322 (3%) Query: 1 MNVIIDSITQDTADIRVFLLKSAD--GSPLPTYKAGAHIDLTLGNGLVRQYSLCCRNPSG 58 M V + S Q ++ F L +AD +PLP +AGAHID+ L NGLVRQYSL Sbjct: 4 MQVRVKSKWQCAEEVAAFELVNADDENAPLPAAEAGAHIDVHLPNGLVRQYSLTDCRTGA 63 Query: 59 ENYRIAVKRETNSRGGSSWLHEHAHPGTPLQAGIPRSAFGLTDAPGPHLLLAGGIGITPL 118 +Y I VKRE NSRGGS+ +HE G LQ +PR+ F L A GP LL+AGGIGITPL Sbjct: 64 CSYVIGVKREPNSRGGSAAMHELVMQGDVLQISLPRNNFPLQKASGPTLLIAGGIGITPL 123 Query: 119 LAMAYALLAD---GRAFTLTCFARDESMLPLRNELHEGPLAIHTRIFCGLDEVATRTGIA 175 LAMA AL AD + L F R E+ L + G D T I Sbjct: 124 LAMARALAADPACREKYALHYFCRSPLHAAFSKEI--AALQQADGMVYGADADETAKHIR 181 Query: 176 EVMAAHAQ-AQVYTCGP-PAFMVAVGELASARYGADHFHQESFQPAAASAAGTDTPFMIR 233 +++ + A VYTCGP P V + D H E F G + PF +R Sbjct: 182 QLLQQRPEGAHVYTCGPGPMIATVVDTARECGWPEDAIHVEYFSNQVDH--GGERPFRVR 239 Query: 234 INDGR-EITVPAGQSALASLQEAGIDLACSCEVGVCGTCKVAVRQGQPDHRDSVLSAEEK 292 + E V GQS + + EAG+ +A SCE GVCGTC V GQP+HRD L+ EK Sbjct: 240 CAGSKLEFQVAVGQSIVEAAAEAGLAIATSCEQGVCGTCLTNVLSGQPEHRDLYLTDAEK 299 Query: 293 ACGKWFMPCVSRSTSDVLVLDI 314 A GK + CVSR D LVLD+ Sbjct: 300 ASGKQMLLCVSRCRGDELVLDL 321 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 760,109 Number of extensions: 32471 Number of successful extensions: 108 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 7 Length of query: 314 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 231 Effective length of database: 914,170 Effective search space: 211173270 Effective search space used: 211173270 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)