BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3882.p
         (401 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino a...    62   7e-11

>gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino acid
           transport systems, periplasmic component
           [Janthinobacterium sp. Marseille]
          Length = 431

 Score = 61.6 bits (148), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 152/334 (45%), Gaps = 22/334 (6%)

Query: 5   KLAGAALALGLACIVAPSGASGPNDRIRIGVITSLTGPAAQSGEQMKAGIE-TWLRQN-G 62
           K AG  +A GL  +  P+ A   N  +R+G+I    G A   GE    G+E T  R N  
Sbjct: 20  KAAGVGVATGL--LGMPAFAQ--NKPLRVGIIAPRGGVAGTIGECGLRGVEWTTARINAA 75

Query: 63  GTVAGKKLEVIYKDDTGPQAEVAKRLATELLVRENVDILAGFIFTPNAIAAAAVADKASK 122
           G + G+K+E++ +++T P+  + +    +L+++E VD + G + +  ++A A  A+ +  
Sbjct: 76  GGIGGRKVELVIQEETSPKDTIDR--FRKLVLQEKVDCVQGIVSSGVSLALAPAAEDSRM 133

Query: 123 PMVVMNAAAS-GVTE---KSRYITRTSYTIAQSVKP--LAEWAYKTGSRRVFSIVSDYAP 176
           P +  +     GV E   K +Y+ R++    ++V    LA   +K   +R+  +  DY+ 
Sbjct: 134 PTIFWDGTTQDGVKETMPKPKYVFRSTDNECEAVMASLLAIKHFKGKFKRIACVNPDYSY 193

Query: 177 GLDAEAWFNKSFTTLG--GNVVASVRVPLNTVDYSAYLQRIKDEKPDAIHVFLPNGQPMV 234
           G +    F       G    VV+     +  +D ++ +  +K  KPD I   L     + 
Sbjct: 194 GRNTWTAFQALLKKYGIEHEVVSEQWSKIGNLDLTSNVAALKAAKPDLIFSSLLFAD-LP 252

Query: 235 AFIKGFKEKGLDKAGIRF-LGGEGWADEDV-LAMGGDAMLGIYTAGFYDYSRPGADNARF 292
            F+K     GL + G RF L   GW    +      + ++  +   ++D  +  A    F
Sbjct: 253 VFMKQAHNAGLTE-GTRFVLPAAGWQHTAMKKEFTPEGIVWGHNTMYFDDPKASATQKEF 311

Query: 293 LQAFSQTVGGRFQPNFLAVSAYDAMNLIAASLGK 326
           ++ ++     +  P++ A  AY +M +  A + K
Sbjct: 312 VKWYADKY--KDYPHWEADRAYFSMMVYKAGVEK 343


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 900,950
Number of extensions: 37635
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 3
Length of query: 401
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 316
Effective length of database: 906,776
Effective search space: 286541216
Effective search space used: 286541216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)