BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3881.p (299 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982855|ref|YP_001355260.1| LysR family transcriptional reg... 230 7e-62 gi|152982346|ref|YP_001355337.1| LysR family transcriptional reg... 151 4e-38 gi|152982787|ref|YP_001352203.1| LysR family transcriptional reg... 126 2e-30 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 61 6e-11 gi|152979818|ref|YP_001353268.1| LysR family transcriptional reg... 61 1e-10 >gi|152982855|ref|YP_001355260.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 230 bits (587), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 113/299 (37%), Positives = 182/299 (60%), Gaps = 3/299 (1%) Query: 1 MSSFDLNLLPIALAVFDERSVSGAARRLGMSQPAVSVALNKLRYALGDPLFVRTARGMEP 60 ++S DLNLL A+ ER+V+ AA RLG+SQPA+S AL +LR DPLFVRT++GM+P Sbjct: 3 IASVDLNLLVAFDAIVKERNVTSAAVRLGVSQPAMSNALARLRIIFNDPLFVRTSQGMQP 62 Query: 61 TPRALALISPTRDILLRVHTDVLASESFNPGTTERRFTLALSDIGEMTFLPKLLDHLRQA 120 TP A LI P + + + + F+P TT + F+ +++IGE+ LPKLL H++ A Sbjct: 63 TPYAEQLIEPVSRACELITSALQINSVFDPATTTKTFSFYMTEIGEILLLPKLLKHIQVA 122 Query: 121 APRASLLSVTMPPPELAAALESGEVDLAVGFFPDLKNRNFFQQRLFSHDFICLLSASHPH 180 AP A + +P A+ +GE+DLAVG FP LK F+QQRL++ F C++ HP Sbjct: 123 APNACVRVRRIPEQGAKEAMANGEIDLAVGLFPYLK-AGFYQQRLYTDKFACIVRQGHPT 181 Query: 181 RSRRISIDKFLSMGHAVIKAEGRSQE-VFEQFLLRRKIERRIVISTPHFMSIPFLIASSD 239 ++ +++ H ++ + + E+ LL + R+IV+++ +F+ +P +I +D Sbjct: 182 VHDSLTPQQYVDTPHVIVMSANTGHDAAIEKILLTEHLRRKIVMTSQNFLVLPMIIEQTD 241 Query: 240 LIATVPRAVGESFAQFAD-IKLVEPPFEIPSFDLKQHWHRKYHKDGGNVWLRSVLARMF 297 IAT+P + + A ++ IK++E P P+ D+KQHWH ++H D N W+R ++ +F Sbjct: 242 AIATIPFRMAQKIASYSTGIKILESPIPFPNVDIKQHWHERFHYDPANKWMRDLMVTLF 300 >gi|152982346|ref|YP_001355337.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 319 Score = 151 bits (382), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 161/302 (53%), Gaps = 11/302 (3%) Query: 3 SFDLNLLPIALAVFDERSVSGAARRLGMSQPAVSVALNKLRYALGDPLFVRTARGMEPTP 62 + DLNLL + AV E++++ AA L M+QPAVS AL +LR LGD L +RTA G++PT Sbjct: 5 TLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLGDELVIRTAHGVKPTS 64 Query: 63 RALALISPTRDILLRVHTDVLASESFNPGTTERRFTLALSDIGEMTFLPKLLDHLRQAAP 122 RA L R L + V ++F+ F +A++D +LP L+ + + AP Sbjct: 65 RAEELWPVVRRALSDLEAAV-TPDTFDVSRANTTFRMAMADATAALWLPFLVRAIEKDAP 123 Query: 123 RASLLSVTMPPPELAAALESGEVDLAVGFFPDL-------KNRNFFQ---QRLFSHDFIC 172 ++ V + E L G++DLA+GFFP + +N Q +RL++ +++C Sbjct: 124 GLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGEYVC 183 Query: 173 LLSASHPHRSRRISIDKFLSMGHAVIKAEGRSQEVFEQFLLRRKIERRIVISTPHFMSIP 232 ++ +HP +++D + + H ++ GR++ + ++ L ERRI+++ F + Sbjct: 184 VMRKNHPLAKVELTLDNYCAAHHLLVSFSGRAKGLMDEALTNLGRERRILLTVNQFFTAG 243 Query: 233 FLIASSDLIATVPRAVGESFAQFADIKLVEPPFEIPSFDLKQHWHRKYHKDGGNVWLRSV 292 ++ASSDLI +PR + S + + PFE+P + WH + ++ + WLR Sbjct: 244 RVVASSDLITVLPRHLIASTGMAEALIAKDLPFELPDVHVDMLWHERDARNPAHKWLREQ 303 Query: 293 LA 294 L+ Sbjct: 304 LS 305 >gi|152982787|ref|YP_001352203.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 126 bits (316), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 142/294 (48%), Gaps = 7/294 (2%) Query: 4 FDLNLLPIALAVFDERSVSGAARRLGMSQPAVSVALNKLRYALGDPLFVRTARGMEPTPR 63 D++L+ I + E++VS A +L QP++S +L KLR GDPL VR ARGM PT Sbjct: 8 LDIHLIRILYLLLCEKNVSRVALKLNRPQPSISASLRKLRELTGDPLLVRGARGMVPTQH 67 Query: 64 ALALISPTRDILLRVHTDVLASESFNPGTTERRFTLALSDIGEMTFLPKLLDHLRQAAPR 123 +L+ + IL + +F P R F +A D F +++ LR+ +P+ Sbjct: 68 GESLMKSAKRILDEAEHLFIPKTAFVPQDEARTFHIAAPDYMNTQFFTEVIARLRRESPK 127 Query: 124 ASLLSVTM-PPPELAAALESGEVDLAVGFFPDLKNRNFFQQRLFSHDFICLLSASHPHRS 182 + ++ + P + L GE+DL + + ++ + +LF +CL+ + + Sbjct: 128 SHIVIHALGPDTDYVRLLSDGELDLVIANWDEMPE-HLHMSKLFDDPIVCLMRSDCAYAK 186 Query: 183 RR----ISIDKFLSMGHAV-IKAEGRSQEVFEQFLLRRKIERRIVISTPHFMSIPFLIAS 237 R ++I+ +LS+ HA + + FL ++ + R IV+ + HF +P+++ Sbjct: 187 RTAKDAMTIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLRRNIVVESAHFRMLPYMVEK 246 Query: 238 SDLIATVPRAVGESFAQFADIKLVEPPFEIPSFDLKQHWHRKYHKDGGNVWLRS 291 +DL+ T + + + +K P + P Q WH + H+ + WLR+ Sbjct: 247 TDLVLTAGQQFTSFYEKTLSLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 61.2 bits (147), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 80/187 (42%) Query: 1 MSSFDLNLLPIALAVFDERSVSGAARRLGMSQPAVSVALNKLRYALGDPLFVRTARGMEP 60 MSS DL LL + V +E ++ AA+R+G+ QP +S + L LG LF R RGME Sbjct: 1 MSSIDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMEL 60 Query: 61 TPRALALISPTRDILLRVHTDVLASESFNPGTTERRFTLALSDIGEMTFLPKLLDHLRQA 120 T AL+ R IL +V+T + + G + R F+P ++ RQ Sbjct: 61 TESGQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQK 120 Query: 121 APRASLLSVTMPPPELAAALESGEVDLAVGFFPDLKNRNFFQQRLFSHDFICLLSASHPH 180 +P + EL L +D+A P + + + I L +H Sbjct: 121 SPGVIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRL 180 Query: 181 RSRRISI 187 RR S+ Sbjct: 181 AQRRKSL 187 >gi|152979818|ref|YP_001353268.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 111/253 (43%), Gaps = 15/253 (5%) Query: 4 FDLNLLPIALAVFDERSVSGAARRLGMSQPAVSVALNKLRY---ALGDPLFVRTARGMEP 60 FDL L + +A+ D S+S AA + A+S A N+LR+ G LF R+A GM Sbjct: 3 FDLIDLRLLVAIADAGSLSKAAASFPI---ALSAASNRLRHFEQRSGLTLFQRSAEGMHL 59 Query: 61 TPRALALISPTRDILLRVHTDVLASESFNPGTTERRFTLAL--SDIGEMTFLPKLLDHLR 118 TP ++ R +LL ++ T +RR TL L + + TFLP L Sbjct: 60 TPAGRLVLDRARHVLLETEN---LKDTLRDLTGQRRITLRLAGTTVANSTFLPAALGPFL 116 Query: 119 QAAPRASLLSVTMPPPELAAALESGEVDLAVGFFPDLKNRNFFQQRLFSHDFICLLSASH 178 P L V ++ A++SGEV++ V +L + F HD + LL S Sbjct: 117 ADYPEIDLQLVEHKSADVLLAVQSGEVEVGV-LDGNLATSDVIPLP-FRHDKLVLLVPSG 174 Query: 179 PHRSRRISIDKFLSMGHA--VIKAEGRSQEVFEQFLLRRKIERRIVISTPHFMSIPFLIA 236 + R S+ ++G A + E Q E+ ++ R+ + P F +I L+A Sbjct: 175 HALAERPSVQLKDALGFAFVCLPPERAMQRFIEEMAVQNSRPLRVRVRAPSFYAIAQLVA 234 Query: 237 SSDLIATVPRAVG 249 IA +P A Sbjct: 235 EQAGIAMLPEAAA 247 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 670,346 Number of extensions: 26046 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 6 Length of query: 299 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 216 Effective length of database: 914,170 Effective search space: 197460720 Effective search space used: 197460720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)