BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3880.p
         (169 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982036|ref|YP_001352463.1| MarR family transcriptional reg...    78   2e-16

>gi|152982036|ref|YP_001352463.1| MarR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 208

 Score = 78.2 bits (191), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 86/142 (60%), Gaps = 2/142 (1%)

Query: 20  PGHLLRRAQQISVSIFHDE-IGGVITPVQYAILRMLSNHPGIDQVRLAGLVAIDTSTGAT 78
           PG L+RR  QI  ++F +E +   ITPVQY++L  L  +  +DQ  LA  + ++ ++ A 
Sbjct: 66  PGFLIRRLHQIHSALFMEETLEHNITPVQYSLLTALEEYGELDQNSLAHHIGLERTSVAE 125

Query: 79  VCARLEEKGLLVREVIPHNRRQRALRITPEGERLLQELIPGLQRLRKRILAPLEEAEQQQ 138
           V  RLE++ L+VR    H++R + ++++ +G  L++++ P +Q+   R +  L   E++ 
Sbjct: 126 VLPRLEQRELIVRSQSEHDKRVKYVKLSRKGRALVKKMRPSVQKAHDRTIESLSPEERKL 185

Query: 139 FMLLLDKLVHENNPHSRAPLTR 160
           F+LL+ +LV ++    R PL +
Sbjct: 186 FILLMVRLV-DSEATDRVPLLK 206


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 401,398
Number of extensions: 15527
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 92
Effective length of database: 936,352
Effective search space: 86144384
Effective search space used: 86144384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)