BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3879.p (349 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979928|ref|YP_001352913.1| vanillate monooxygenase, alpha ... 196 3e-51 gi|152981997|ref|YP_001354194.1| hypothetical protein mma_2504 [... 69 4e-13 gi|152981999|ref|YP_001353364.1| hypothetical protein mma_1674 [... 69 4e-13 gi|152981877|ref|YP_001355367.1| hypothetical protein mma_3677 [... 56 3e-09 gi|152981998|ref|YP_001351914.1| hypothetical protein mma_0224 [... 55 5e-09 >gi|152979928|ref|YP_001352913.1| vanillate monooxygenase, alpha subunit [Janthinobacterium sp. Marseille] Length = 358 Score = 196 bits (497), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 117/346 (33%), Positives = 170/346 (49%), Gaps = 7/346 (2%) Query: 2 FPKNAWYVACTPDEIESKPLGRQICGEKIVFYRGAEGKVAAVEDFCPHRGAPLSLGFVRE 61 F +NAWYVA E+ + L R+I GE ++ YR +G A+ D CPH+ APLSLG ++ Sbjct: 4 FIRNAWYVAAWSKEVGRQYLTRRILGEPVLMYRKEDGSPVALLDRCPHKLAPLSLGELKG 63 Query: 62 GQLVCGYHGLEMGCDGHTRNMPGQ-RVRGFPCIRSFPVVERYGFIWVWPGEKEQADPARI 120 + CGYHGL+ C G +PGQ ++ ++SFP+VERY +W+W GE A+P I Sbjct: 64 DIVECGYHGLQFDCSGTCVRVPGQPQIPPTAQVKSFPLVERYNAVWIWMGEATLANPDDI 123 Query: 121 HHLEWADNPEWAYGGGLY-HINCDYRLMIDNLMDLTHETYVHASSIGQKEIDEAPVNTRV 179 +E P W G Y H +Y + DNL+D H TYVH ++IG + V Sbjct: 124 VEVERYQMPGWDLIDGQYLHFKSNYLNITDNLVDPAHTTYVHKNTIGNAAGENVAVKVEQ 183 Query: 180 EGEQVITSRFMENIMPPPFWRMALRGNGLADEVPVDRWQICRFSPPSHVMIEVGVAHAGK 239 V+ R++EN P P + GL DRWQ PS ++ G AG Sbjct: 184 GDNHVLAYRWIENAEPIPLAKKMGDFKGLT-----DRWQYYYLLMPSISYVDFGTVDAGI 238 Query: 240 GGYEAPPEHKASSIVVDFITPETETSHWYFWGMARHFRPDDKELTATIREGQGKIFGEDR 299 E S +F+TPETE + YFW R+++ ++ A + + F ED Sbjct: 239 ERSEENKNRGLRSFSYNFLTPETENTTHYFWLHVRNYQTGKADIDADVTKLMTLTFEEDM 298 Query: 300 EMLELQQANLLKYPERRLLALNIDAGGVQSRKVLDKWLAREAEAGK 345 +L Q + R + L ID + RK++DK +A E A + Sbjct: 299 AILAAVQQAQDETGVREYVRLGIDNAPARIRKMVDKRIAAEQLAAE 344 >gi|152981997|ref|YP_001354194.1| hypothetical protein mma_2504 [Janthinobacterium sp. Marseille] Length = 354 Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 72/308 (23%), Positives = 123/308 (39%), Gaps = 33/308 (10%) Query: 7 WYVACTPDEIESKPLGRQICGEKIVFYRGAEGKVAAVEDFCPHRGAPLSLGFVREGQLVC 66 W+ E+ PL + + +V R G V A++ CPH+G L+LG + +G + C Sbjct: 30 WHPVAYASELGDTPLAVTLLDQSLVLAR-LNGVVTALDSRCPHKGTSLALGQIVDGTIEC 88 Query: 67 GYHGLEMGCDGHTRNMPGQR-----VRGFPCIRSFPVVERYGFIWVWPGEKEQADPARIH 121 YHG G +P + ++ + + E G IWV E A P Sbjct: 89 PYHGWRYDDGGKCVRVPAREELCDVLKA--SVAKYHAAEHVGIIWVALEEPLYAFP---D 143 Query: 122 HLEWADNPEWAYGGGLYHINCDYRLMIDNLMDLTHETYVHASSIGQKEIDEA-PVNTRVE 180 E+ D G Y ++N +D H ++VH +IG + PV+ E Sbjct: 144 FPEFEDAEYNVLQGTSYDWATSSPRRLENFVDFAHFSFVHDGTIGSRSNPRVEPVDVWRE 203 Query: 181 GEQVITSRFMENIMPPPFWRMALRGNGLADEV--PVDRWQICRFSPPSHVMIEVGVAHAG 238 G + RF + + P + G+ D + PV+ + + H + + G Sbjct: 204 GPVL---RFNRSGVKEPGVGLKKELLGITDALIEPVNEYHVTM----PHTVHLKRIFPNG 256 Query: 239 KGGYEAPPEHKASSIVVDFITPETETSHWYFWGMARHFRPDDKELTATIREGQGKIFGED 298 K ++ +P T T FW +AR F D K A R+ + ++ G+D Sbjct: 257 K-----------RYVLFMSASPVTATQTRSFWWIARDFGTDTKH-DAFFRDFEDEVLGQD 304 Query: 299 REMLELQQ 306 + ++E Q+ Sbjct: 305 KPIIESQR 312 >gi|152981999|ref|YP_001353364.1| hypothetical protein mma_1674 [Janthinobacterium sp. Marseille] Length = 231 Score = 68.9 bits (167), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 4/117 (3%) Query: 5 NAWYVACTPDEIESKPLGRQIC-GEKIVFYRGAEGKVAAVEDFCPHRGAPLSLGFVREGQ 63 N W V E+ + + + G+++ +R A G++ + CPHRG ++G + + Q Sbjct: 9 NNWSVVAASVEVPAGEIVQAFLHGQELALWRNAAGEIQVWANRCPHRGTRFTMGRIVDDQ 68 Query: 64 LVCGYHGLEMGCDGHTRNMPGQRVRGFP---CIRSFPVVERYGFIWVWPGEKEQADP 117 L CGYHG G G +P P C ++F VERYG IW G E P Sbjct: 69 LSCGYHGWRFGSGGQCTYIPAHPKLPPPKTVCAKTFQAVERYGMIWTSLGAPETEVP 125 >gi|152981877|ref|YP_001355367.1| hypothetical protein mma_3677 [Janthinobacterium sp. Marseille] Length = 580 Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 6/88 (6%) Query: 24 QICGEKIVFYRGAEGKVAAVEDFCPHRGAPLSLGFVREGQLVCGYHG--LEMGCDGHTRN 81 Q+ G ++ +R G V E+ CPHRG L+LG L C YHG E G DG Sbjct: 27 QLFGYELALWRDDTGAVNVWENRCPHRGLRLTLGTNTGTDLQCRYHGWSFESG-DGGCSF 85 Query: 82 MPGQRVRGFP---CIRSFPVVERYGFIW 106 +P R P C+ + PV ER GF+W Sbjct: 86 VPAHRDDSEPSKACVLTLPVSERNGFVW 113 >gi|152981998|ref|YP_001351914.1| hypothetical protein mma_0224 [Janthinobacterium sp. Marseille] Length = 365 Score = 55.5 bits (132), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 61/252 (24%), Positives = 102/252 (40%), Gaps = 37/252 (14%) Query: 2 FPKNAWYVACTPDEIESK------PLGRQICGEKIVFYRGAEGKVAAVEDFCPHRGAPLS 55 + ++ W+ CT E P+ ++ GE IV + +G++AA+ D C HR A LS Sbjct: 12 YLRHFWHPVCTLKEFTESAPEGVGPMAVKLLGEDIVLAK-LDGRIAAMRDRCAHRFAKLS 70 Query: 56 LGFVREGQ----LVCGYHGLEMGCDGHTRNMPG-------QRVRGFPCIRSFPVVERYGF 104 G V++G+ L C YHG + DG R +P ++ R +F RY Sbjct: 71 KGCVKQGEAGDRLECPYHGWQYDKDGACRTIPACPELPIPKKARS----DAFECEVRYDI 126 Query: 105 IWVWPGEKEQADPARIHHLEWADNPEWAYGGGLYHINCDYRLMIDNLMDLTHETYVHASS 164 +WV + +W + Y +N D +H +VH + Sbjct: 127 VWVRLDASFGVTEIPVFS-DWEEEGMRVIVVDSYVWQTTAERRWENFTDFSHFAFVHPGT 185 Query: 165 IGQKEIDEAPVN--TRVEGEQVITSRFMENIMPPPFWRMALRGNGLADEVPVDRWQICRF 222 + P+ +RV GE RF +I PP + L D+ P+ + I R Sbjct: 186 LYDAAYARPPLAPVSRVGGEM----RF--SIEPP-----KEMTDQLPDDCPIGAF-IYRC 233 Query: 223 SPPSHVMIEVGV 234 + P + +E+ + Sbjct: 234 TMPYTINLEIAL 245 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.139 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 900,760 Number of extensions: 39699 Number of successful extensions: 89 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 83 Number of HSP's successfully gapped: 5 Length of query: 349 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 265 Effective length of database: 910,473 Effective search space: 241275345 Effective search space used: 241275345 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)