BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3878.p (318 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981444|ref|YP_001353363.1| vanB family oxidoreductase/oxyg... 293 7e-81 gi|152981483|ref|YP_001351917.1| vanB family oxidoreductase/oxyg... 249 1e-67 gi|152981490|ref|YP_001354196.1| vanB family oxidoreductase/oxyg... 239 2e-64 gi|152981503|ref|YP_001352912.1| vanillate monooxygenase, beta s... 239 2e-64 gi|152981877|ref|YP_001355367.1| hypothetical protein mma_3677 [... 225 3e-60 >gi|152981444|ref|YP_001353363.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 319 Score = 293 bits (751), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 155/320 (48%), Positives = 200/320 (62%), Gaps = 3/320 (0%) Query: 1 MTTLQVKVAARREEAQDIVALELVAADGQPLPPFTAGAHIDVHLPGGLVRQYSLCNAPHE 60 MTTL V+V +EA DI + EL + G+ LP FT G+HIDVH+ GL+RQYSLCN P E Sbjct: 1 MTTLTVRVHKITQEACDIKSFELRSVSGEALPAFTPGSHIDVHIGEGLIRQYSLCNGPDE 60 Query: 61 QHRYQIGVLRDANSRGGSVAVHEALQVGELITISAPRNQFALHSARHS-LLLAGGIGITP 119 RY I V ++ SRGGS A+HE+++ G+ I ISAPRN F L ++ LLLAGGIG+TP Sbjct: 61 PDRYLIAVKKEVTSRGGSQAMHESIREGDQIKISAPRNNFPLEQSQGPYLLLAGGIGVTP 120 Query: 120 ILCMAEALAAEGASFEMHYCARSPARQAFRERIAACGFADRVVHHYDDGAAAQKLDLAAL 179 +L MA L A+G FE+ Y RS A AF ++ F R+ HY + L L Sbjct: 121 VLSMARHLLAQGVEFELQYFTRSIAHTAFHALLSEPEFQGRIKFHYALEPEGLRAYLRKL 180 Query: 180 LARVDPATHLYVCGPTGFIAHVVDTARARGWPDSQVHYEYFGAAPVNVDGNG-AFEVKLA 238 L LY+CGP F+ V TA A WP VH EYF A P+++ G +FEV+LA Sbjct: 181 LWHYPENGSLYLCGPRVFMDLVESTAAAT-WPPEAVHLEYFSADPLSLAGEQESFEVRLA 239 Query: 239 SSGQVYTIPPERTVIQVLVEHGVDVPVSCEQGICGTCLTRVLEGEPDHRDQYLTDEERAA 298 +G Y +P + + L HG+ + SCEQG+CGTCLT VLEG PDHRD YL+D E+ + Sbjct: 240 RTGGTYAVPAGMPITEALAAHGIHIDTSCEQGVCGTCLTGVLEGTPDHRDVYLSDAEKKS 299 Query: 299 NDQFTPCCSRARSPMLVLDL 318 D+ PC SRA+SP+LVLDL Sbjct: 300 CDKIMPCVSRAKSPLLVLDL 319 >gi|152981483|ref|YP_001351917.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 321 Score = 249 bits (637), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 153/324 (47%), Positives = 201/324 (62%), Gaps = 9/324 (2%) Query: 1 MTTLQVKVAARREEAQDIVALELVAADGQ--PLPPFTAGAHIDVHLPGGLVRQYSLCNAP 58 M T+QV+V ++ + A+++ A ELV AD + PLP AGAHIDVHLP GLVRQYSL + Sbjct: 1 MNTMQVRVKSKWQCAEEVAAFELVNADDENAPLPAAEAGAHIDVHLPNGLVRQYSLTDCR 60 Query: 59 HEQHRYQIGVLRDANSRGGSVAVHEALQVGELITISAPRNQFALHSARH-SLLLAGGIGI 117 Y IGV R+ NSRGGS A+HE + G+++ IS PRN F L A +LL+AGGIGI Sbjct: 61 TGACSYVIGVKREPNSRGGSAAMHELVMQGDVLQISLPRNNFPLQKASGPTLLIAGGIGI 120 Query: 118 TPILCMAEALAAEGA---SFEMHYCARSPARQAFRERIAACGFADRVVHHYDDGAAAQKL 174 TP+L MA ALAA+ A + +HY RSP AF + IAA AD +V+ D A+ Sbjct: 121 TPLLAMARALAADPACREKYALHYFCRSPLHAAFSKEIAALQQADGMVYGADADETAKH- 179 Query: 175 DLAALLARVDPATHLYVCGPTGFIAHVVDTARARGWPDSQVHYEYFGAAPVNVDGNGAFE 234 + LL + H+Y CGP IA VVDTAR GWP+ +H EYF + V+ G F Sbjct: 180 -IRQLLQQRPEGAHVYTCGPGPMIATVVDTARECGWPEDAIHVEYF-SNQVDHGGERPFR 237 Query: 235 VKLASSGQVYTIPPERTVIQVLVEHGVDVPVSCEQGICGTCLTRVLEGEPDHRDQYLTDE 294 V+ A S + + +++++ E G+ + SCEQG+CGTCLT VL G+P+HRD YLTD Sbjct: 238 VRCAGSKLEFQVAVGQSIVEAAAEAGLAIATSCEQGVCGTCLTNVLSGQPEHRDLYLTDA 297 Query: 295 ERAANDQFTPCCSRARSPMLVLDL 318 E+A+ Q C SR R LVLDL Sbjct: 298 EKASGKQMLLCVSRCRGDELVLDL 321 >gi|152981490|ref|YP_001354196.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 327 Score = 239 bits (610), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 147/326 (45%), Positives = 189/326 (57%), Gaps = 14/326 (4%) Query: 3 TLQVKVAARREEAQDIVALELVAADGQPLPPFTAGAHIDVHLPGGLVRQYSLCNAPHEQH 62 T QV V A R EA+ I + EL G+ LP AGAHIDVHLP GLVRQYSL + P E Sbjct: 6 TRQVWVRAIRIEAEQIRSFELCPLAGERLPAAAAGAHIDVHLPNGLVRQYSLLH-PGESK 64 Query: 63 RYQIGVLRDANSRGGSVAVHEALQVGELITISAPRNQFALHS-ARHSLLLAGGIGITPIL 121 Y IGV RD SRGGS +HEA++ G+++TIS PRN F LH A HS+L+AGGIGITPI Sbjct: 65 AYMIGVNRDPVSRGGSSYLHEAVKPGDVLTISVPRNNFPLHEEAAHSVLIAGGIGITPIF 124 Query: 122 CMAEALAAEGASFEMHYCARSPARQAFRERI---AACGFADRVVHHYDDGAAAQKLDLAA 178 M + L G ++ ++YC R+ R AF + + AA + +D Q L+LA Sbjct: 125 SMVQRLNQIGRAWTLYYCTRTEERAAFLDELKTLAATTETGNLHTVFDQVPGNQMLNLAE 184 Query: 179 LLARVDP----ATHLYVCGPTGFIAHVVDTARARGWPDSQVHYEYFGAAPV--NVDGNGA 232 L+ + A H Y CGP G + A A + +VH EYF A V NV Sbjct: 185 LVQHSEAEHAGAAHFYCCGP-GMLLQGFQQATATVAAE-RVHVEYFSAPAVASNVAAK-T 241 Query: 233 FEVKLASSGQVYTIPPERTVIQVLVEHGVDVPVSCEQGICGTCLTRVLEGEPDHRDQYLT 292 F V LA SGQ + IP ++++++VL+ GV V SC +G+CG+C T VL GEP+HRD L+ Sbjct: 242 FSVTLARSGQTFQIPADQSILEVLLSKGVSVLSSCREGVCGSCETAVLAGEPEHRDAVLS 301 Query: 293 DEERAANDQFTPCCSRARSPMLVLDL 318 ERA N C SR + L LDL Sbjct: 302 AAERADNRTMMLCVSRCKGTSLTLDL 327 >gi|152981503|ref|YP_001352912.1| vanillate monooxygenase, beta subunit [Janthinobacterium sp. Marseille] Length = 329 Score = 239 bits (609), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 144/326 (44%), Positives = 193/326 (59%), Gaps = 13/326 (3%) Query: 1 MTTLQVKVAARREEAQDIVALELVAADGQPLPPFTAGAHIDVH--LPGGLV--RQYSLCN 56 +T + V V+ R I A L + DG LP +TAGAHI V LPGG R YSL + Sbjct: 9 LTPITVVVSEIRALTPTIKAFVLHSTDGTALPAYTAGAHIRVQVILPGGDADERSYSLID 68 Query: 57 ---APHEQHRYQIGVLRDANSRGGSVAVHEALQVGELITISAPRNQFALH-SARHSLLLA 112 + Y+I V R+A +GGS +H L+VG ++I P+N F L SARH++L+A Sbjct: 69 DSVGSECRSYYRIAVQREAKGKGGSAFMH-GLEVGSHLSIRPPKNDFPLDASARHNVLIA 127 Query: 113 GGIGITPILCMAEALAAEGASFEMHYCARSPARQAFRERIAACGFADRVVHHYDDGAAAQ 172 GGIGITPIL MA AL A G SFE HY RSP AFR+ + F + ++ +D G + Sbjct: 128 GGIGITPILAMAYALQAGGRSFEFHYGTRSPDLMAFRDVVET--FRNAALY-FDGGDPRR 184 Query: 173 KLDLAALLARVDPATHLYVCGPTGFIAHVVDTARARGWPDSQVHYEYFGAAPVNVDGNGA 232 L L ALLA H+YVCGP G I V+ TA+ GW D VH+E F + P G+ A Sbjct: 185 GLQLEALLAHPANGKHVYVCGPRGLIDAVIATAKHYGWADDHVHFELFNS-PAAQGGDTA 243 Query: 233 FEVKLASSGQVYTIPPERTVIQVLVEHGVDVPVSCEQGICGTCLTRVLEGEPDHRDQYLT 292 FEV+L +SG+ +P +++++ V++ G D+ C++G CG C T VLEG PDHRD L Sbjct: 244 FEVELRASGKTLQVPVDKSILDVILAAGCDLMYDCKRGECGMCATAVLEGIPDHRDYNLP 303 Query: 293 DEERAANDQFTPCCSRARSPMLVLDL 318 ++ERAA C SRA+S LVLD+ Sbjct: 304 EDERAAGKVMCICVSRAKSARLVLDI 329 >gi|152981877|ref|YP_001355367.1| hypothetical protein mma_3677 [Janthinobacterium sp. Marseille] Length = 580 Score = 225 bits (574), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 131/313 (41%), Positives = 179/313 (57%), Gaps = 5/313 (1%) Query: 7 KVAARREEAQDIVALELVAADGQPLPPFTAGAHIDVHLPGGLVRQYSLCNAPHEQHRYQI 66 +V R +E+ ++A EL + G+ LPP AGAHI++ P GLVRQYS+ NAP E+ I Sbjct: 272 EVLRRWKESDGVMAFELRSISGK-LPPMQAGAHINLRTPSGLVRQYSIVNAPTERATLTI 330 Query: 67 GVLRDANSRGGSVAVHEALQVGELITISAPRNQFAL-HSARHSLLLAGGIGITPILCMAE 125 GV + +SRGGS ++H + G + RN F L + ++ +L+AGGIGITP++ MA+ Sbjct: 331 GVKLEPDSRGGSASMHASALPGTHLEFVPTRNTFPLLDTPKYPVLIAGGIGITPLVSMAQ 390 Query: 126 ALAAEGASFEMHYCARSPARQAFRERIAACGFADRVVHHYDDGAAAQKLDLAALLARVDP 185 AL A G F +HY RS +F R+AA F D++V H K L +L + Sbjct: 391 ALHAAGKDFRLHYFVRSDEHVSFASRMAA--FQDKLVLHAACTPQETKSILDQVLTQSSQ 448 Query: 186 ATHLYVCGPTGFIAHVVDTARARGWPDSQVHYEYFGAAPVNVDGNGAFEVKLASSGQVYT 245 +Y CGP + + +A G PD+ V +E F DG F VKL +GQ T Sbjct: 449 PQIVYACGPGPMLTTIRACTQAAGMPDADVRFEIFRNDKDFGDGK-PFTVKLKRNGQTIT 507 Query: 246 IPPERTVIQVLVEHGVDVPVSCEQGICGTCLTRVLEGEPDHRDQYLTDEERAANDQFTPC 305 +P T++ L +G+ V SCEQGICG+CLTRV G P+HRD YLT +E+AAN C Sbjct: 508 VPRGETLLAALKRNGIPVEASCEQGICGSCLTRVSSGVPEHRDSYLTPQEKAANTCMMAC 567 Query: 306 CSRARSPMLVLDL 318 SRA S L LDL Sbjct: 568 VSRAISEELELDL 580 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 703,670 Number of extensions: 28071 Number of successful extensions: 113 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 7 Length of query: 318 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 235 Effective length of database: 914,170 Effective search space: 214829950 Effective search space used: 214829950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)