BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3877.p
         (395 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a...    60   3e-10
gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino a...    55   8e-09

>gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid
           transport systems, periplasmic component
           [Janthinobacterium sp. Marseille]
          Length = 385

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 144/339 (42%), Gaps = 23/339 (6%)

Query: 6   INTHRRHLMLAGSALAAGALPLLARAADAVKVGLIVPMSGPFASTGRQIEAAVKL---YQ 62
           +N H +  + A   LA  A    A A + +K+G+  P++GP A+ G  +    ++   Y 
Sbjct: 1   MNWHIKKSLAACIGLAMFA-ATSAYAQETIKIGVTEPLTGPVAAAGTYVTNGARIAADYV 59

Query: 63  QKYGESVAGRKVEILLKDDGGVSPDVTKRLAQELVARDKAQVLMGFGLTPLALAAAPIAT 122
            + G  V G+K++++++D+   +P       ++L+ +DK  VLMG   +   LA  P   
Sbjct: 60  NQNG-GVLGKKIQLVIEDNKS-NPREAVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLI 117

Query: 123 QAKVPMIVTAAATS-IIPQRSPFIVRTGFTLAQVTAPLASW--AAKNGIKSVVTFVSDYG 179
           + +VP++V AA++S I    +P++ RT  T A      +         IK     V +  
Sbjct: 118 EYEVPLVVEAASSSKITTAGNPWVFRTSPTSAMEAQAFSKVIDGYNPAIKKADFLVVNND 177

Query: 180 PGLDAEKVFVKNFSEAGGKVMESVRVPLRNPDYAPFLQRVKDAKPEALFVFVPSGEGAAV 239
            GL A   F K     G  +  +  +     D +  L  +K +  + +FV     +    
Sbjct: 178 WGLGAAVEFKKMLEAKGIAIGRTETMTPDMTDLSAQLAALKGSGSDTVFVTSGIEQLTLA 237

Query: 240 LKQFTERGLGAAGIRLICTGDVLDDDLMAGIGAAAKDVVSSHHY--------SAAHPSAA 291
           ++Q  E+ L     R+I TG    + L+   G   K  VS H           A HP+ A
Sbjct: 238 IRQAGEQRLPQ---RIITTGGAFPEPLLKTPG--PKGYVSQHLLFFAPWAPERAKHPAVA 292

Query: 292 NKEYVESIAKANKGMRANFHSVGAYDGMHLLYESLKKTG 330
            K +++        +         +D +  + E++K  G
Sbjct: 293 -KAFMDGWKSRGLELAGQVEGFRGFDAILTIAEAIKLAG 330


>gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino acid
           transport systems, periplasmic component
           [Janthinobacterium sp. Marseille]
          Length = 381

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 115/262 (43%), Gaps = 28/262 (10%)

Query: 13  LMLAGSALAAGALPLLARAADAVKVGLIVPMSGPFASTGRQIEAAVKLYQQKY---GESV 69
           L LAGS LA   +         VK+G + P++G  A  G+  E   +L  ++    G  +
Sbjct: 16  LALAGSTLAQEQI---------VKIGHVGPVTGTDAHMGKDNENGARLAVEELNAKGVVI 66

Query: 70  AGRKVEI-LLKDDGGVSPDVTKRLAQELVARDKAQVLMGFGLTPLALAAAPIATQAKVPM 128
            G+KV++  + +D    P      A +LV  + A V++G   +   + A+ I   A    
Sbjct: 67  NGKKVKLQYMPEDDAADPKQATAAATKLVDSNVA-VVIGHLNSGATIPASRIYANAG--- 122

Query: 129 IVTAAATSIIPQRSPFIVRTGFTL----AQVTAPLASWAAKNGIKSVVTFVSD---YGPG 181
           IV  + +S  P+ +    +T F +    AQ+   L  +A K+     V  + D   YG G
Sbjct: 123 IVQISPSSTSPKYTQQGFKTAFRVVANDAQLGRVLGQYAVKSLAAKNVAVIDDRTAYGQG 182

Query: 182 LDAEKVFVKNFSEAGGKVMESVRVPLRNPDYAPFLQRVKDAKPEALFVFVPSGEGAAVLK 241
           +  E  F K    AGG V+ S     +  D+   L  +K  KP+ +F       G  +L+
Sbjct: 183 VAEE--FAKGVKAAGGTVVASQYTNNKATDFNAILTAIKAKKPDVIFFGGMDAVGGPMLQ 240

Query: 242 QFTERGLGAA--GIRLICTGDV 261
           Q  + G+ A   G   ICTG +
Sbjct: 241 QMKQLGINAKFMGGDGICTGSL 262


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 806,351
Number of extensions: 30983
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 3
Length of query: 395
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 310
Effective length of database: 906,776
Effective search space: 281100560
Effective search space used: 281100560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)