BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3874.p
         (205 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981582|ref|YP_001354017.1| hypothetical protein mma_2327 [...   107   4e-25

>gi|152981582|ref|YP_001354017.1| hypothetical protein mma_2327
           [Janthinobacterium sp. Marseille]
          Length = 219

 Score =  107 bits (268), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 2/179 (1%)

Query: 28  IIEHYSQPHRHYHTLQHLEECFEKWEELRAESHHPGEVELALWFHDLIYDVRRHDNEERS 87
           ++ HYS+P R YH L H+     + E+ R        VE A+WFHD+IYD    DNE+RS
Sbjct: 37  LLRHYSEPQRSYHNLSHVAALLRRAEQQREHIRSMETVEFAIWFHDVIYDTHLKDNEQRS 96

Query: 88  AAQATTCLQEAGATEETARRVHALIMATRQHDAKAD--VDTTILVDVDLSILAAPAARFQ 145
           A  A   +      E     V   I+AT  H   A   +D  + +D+DL+IL A    +Q
Sbjct: 97  AEWARCAMIAMNIDEYHIPPVWECIVATATHTVTAPEIIDLPLFLDMDLAILGAEEKIYQ 156

Query: 146 EYERQIRAEYQYVPQPLFKQERKKILQAFLHRPRIFNTDRFFQRYEQAARENIEQALQG 204
            Y + I++EY +V    ++  R ++++ FL RP +F T R     E  AR N+   L+ 
Sbjct: 157 AYSKAIQSEYAWVASEDYRHGRSRVIEDFLQRPALFYTPRMAAELEGQARHNLGAELRA 215


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 447,084
Number of extensions: 15662
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 126
Effective length of database: 928,958
Effective search space: 117048708
Effective search space used: 117048708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)