BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3867.p
         (270 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981479|ref|YP_001355355.1| IclR family transcriptional reg...    72   3e-14
gi|152981351|ref|YP_001352423.1| IclR family transcriptional reg...    67   1e-12

>gi|152981479|ref|YP_001355355.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 257

 Score = 72.0 bits (175), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 2/168 (1%)

Query: 80  NKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSA 139
           +K ++L P++  LG +  H   L  I  P+L RLA S G+ +   V   +  +C++ +  
Sbjct: 66  SKRYTLGPVMFELGLAATHQFNLRDICAPVLERLAQSTGDTSFLFVRSGNDAICLSRIQG 125

Query: 140 GQLVSTTLQP-GTRVPAYCTANGRILLANLAPAELDTLLARAQPEAITAHTITDVERLAL 198
              + T + P G+R P   +A G  LL+ L  AE + +L   +P  ++ +   D+  +  
Sbjct: 126 NYPIQTPVVPVGSRQPLGVSAGGLALLSCLPKAEAEQILREVEPR-LSVYENLDINDVID 184

Query: 199 EIARARVQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAARM 246
              R    GYA +      G+  + +P+RN  G  VAA+ ++   ARM
Sbjct: 185 HYNRTHELGYAWISNHAVPGVSALGLPIRNAAGTAVAAITVATTLARM 232


>gi|152981351|ref|YP_001352423.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 258

 Score = 67.0 bits (162), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 3/223 (1%)

Query: 47  LTIAEVAQLTGLTRAAARRYLITLTHLGYM-RHDNKTFSLTPMVLRLGQSYLHSARLPRI 105
           +++ E++ +TGL  + A R L  L    ++ R +  T+ L   +L LG        +   
Sbjct: 32  VSLKELSSVTGLHPSTAHRILNDLVIKRFVDRSEPGTYRLGMRLLELGNIVKSRLDVREA 91

Query: 106 VQPLLYRLAYSLGEAASCGVLDHDQLVCVA-AVSAGQLVSTTLQPGTRVPAYCTANGRIL 164
              L+  L     +  +  V  +D+++ +  A S    +      G R P + T+ G++ 
Sbjct: 92  ALDLMRHLHRKTNQTVNLSVRQNDEIIYIDRAFSERSGMQVVRAVGGRAPLHLTSTGKLF 151

Query: 165 LANLAPAELDTLLARAQPEAITAHTITDVERLALEIARARVQGYALVDQELELGLRTMAV 224
           L+   P  +     R        ++ITD+++L  E+ + R+ GYA  ++ELELG+R MA 
Sbjct: 152 LSIDEPRMVQAYATRTGLAGHNKNSITDLKKLEGELNQVRLHGYARDNEELELGVRCMAA 211

Query: 225 PVRNFRGEVVAAMNISVHAARMKLEDMVERCLPAMLKIQVELG 267
            + +  G ++A ++IS  A R++ E+ +   +    +I   LG
Sbjct: 212 GIHDDTGRLIAGLSISAPADRLQ-EEWLADLMDTAKQISAALG 253


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 570,233
Number of extensions: 22252
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 188
Effective length of database: 917,867
Effective search space: 172558996
Effective search space used: 172558996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)