BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3861.p
         (159 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980927|ref|YP_001351836.1| Lpr family transcriptional regu...   122   8e-30
gi|152981736|ref|YP_001352356.1| AsnC family transcriptional reg...    90   7e-20
gi|152981798|ref|YP_001355132.1| auxin efflux carrier [Janthinob...    87   4e-19

>gi|152980927|ref|YP_001351836.1| Lpr family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 155

 Score =  122 bits (307), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 90/152 (59%)

Query: 2   ELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLL 61
           + D  D  +L  LQ     SN+EL+ R+NLSP     RV+RLE EG+I  Y A  D   +
Sbjct: 3   KFDRYDRILLETLQSKGRASNVELSERVNLSPPQCYRRVQRLEQEGVIRGYSAQVDAAAI 62

Query: 62  GLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHF 121
           GL V  FV + + R+  + + + E A+  F E++E Y ++GD DYLL++V  DL +L  F
Sbjct: 63  GLGVTAFVNLNIAREQFKQVRELEKAIRQFPEILECYTISGDFDYLLKVVAVDLKSLSSF 122

Query: 122 IVDHLTKIPGIKNIRSSFALKQIKYKTALPTP 153
           + D L ++PG+  +RS   L++IK  + LP P
Sbjct: 123 LTDRLMQVPGVAGVRSMVCLEEIKPASPLPLP 154


>gi|152981736|ref|YP_001352356.1| AsnC family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 169

 Score = 89.7 bits (221), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 81/146 (55%)

Query: 3   LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62
           LD  D ++LN+LQ+++      LA ++++S    L R++ +   GIIS  VA+ DP  LG
Sbjct: 7   LDKVDRKLLNLLQKDNQTPTRTLADKVHISQPTCLRRIRDMRDAGIISADVAMIDPFALG 66

Query: 63  LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122
             +  F++V L  Q  E + +FE  +    EVM+ Y ++GD DY L + V D+     F+
Sbjct: 67  YGMLAFLEVSLGNQSDEHMQEFEVRMGKEAEVMQCYFVSGDYDYFLVVHVVDMDAYYQFV 126

Query: 123 VDHLTKIPGIKNIRSSFALKQIKYKT 148
              ++    +++ +S F +K+ K+ T
Sbjct: 127 RRAISGSGNVRHFQSRFPMKRAKFDT 152


>gi|152981798|ref|YP_001355132.1| auxin efflux carrier
           [Janthinobacterium sp. Marseille]
          Length = 157

 Score = 87.4 bits (215), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 86/149 (57%), Gaps = 2/149 (1%)

Query: 1   MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHL 60
           ++LD  D RILN LQ ++S +N +LA+ ++ SP   L RVKRL   G+I R VA+  P +
Sbjct: 6   LDLDELDRRILNALQMDASQTNNDLAAAVHASPPTCLRRVKRLIDAGVIERQVAIVAPQM 65

Query: 61  LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH 120
           +G  +   V++ L++Q  E   +FE  V+    V++ Y ++   D++L + V D+    H
Sbjct: 66  VGAGLTSIVEITLDKQADEQQVEFEALVAQESAVLQCYRVSPGPDFVLVVQVADMPAY-H 124

Query: 121 FIVDHLTKI-PGIKNIRSSFALKQIKYKT 148
            +   L      ++N+RS F++ + K++T
Sbjct: 125 VLAHRLFATHANVRNVRSFFSINRSKFET 153


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 318,354
Number of extensions: 11169
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 3
Length of query: 159
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 83
Effective length of database: 940,049
Effective search space: 78024067
Effective search space used: 78024067
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)