BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3860.p (893 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980292|ref|YP_001352363.1| pyruvate dehydrogenase subunit ... 951 0.0 gi|152979821|ref|YP_001353573.1| 2-oxoacid dehydrogenase subunit... 933 0.0 >gi|152980292|ref|YP_001352363.1| pyruvate dehydrogenase subunit E1 [Janthinobacterium sp. Marseille] Length = 898 Score = 951 bits (2459), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/859 (53%), Positives = 614/859 (71%), Gaps = 17/859 (1%) Query: 14 DIDAQETQEWLQALQSVLAEAGPERARFLLSRLSAAAQQWGVNWRDARNTPYLNTIRPAQ 73 D D ETQEWL AL++V+ GP+RA +L+ RL A++ G + T Y+NTI Sbjct: 15 DPDVMETQEWLDALEAVIENEGPDRAHYLMERLIDLARRRGSQVPFSSTTAYVNTIPAEM 74 Query: 74 EPPFPGGSDAQAIEERIASIMRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHF 133 PG + EER+ S MRWNA+AMVV+ANR G+LGGHI+S+AS A++ GFNHF Sbjct: 75 GENSPGNLE---YEERLRSWMRWNAMAMVVKANRVDGDLGGHISSFASLANMLGTGFNHF 131 Query: 134 FRARDDKFAGDVVYFQPHSAPGIYARAFLEGALSEDDLAYYRREIEAKRVGRQGLSSYPH 193 + A + GD++Y Q HS+PG+YARAFLEG LSE+ L +RRE++ K GLSSYPH Sbjct: 132 WHAPTEDHGGDLLYIQGHSSPGVYARAFLEGRLSEEQLINFRREVDGK-----GLSSYPH 186 Query: 194 PWLMPHFWQFPTGSMGIGPINAIYQARFLRYMEHRGLLQDQGRKVWGVFGDGEMDEPESL 253 P LMP FWQFPT SMG+GP+ AIYQARFL+Y++ R + + RKVW GDGEMDE ES+ Sbjct: 187 PKLMPDFWQFPTVSMGLGPLMAIYQARFLKYLQARDIAKTDNRKVWVFCGDGEMDEVESM 246 Query: 254 AALSLASREKLDNLIFVVNCNLQRLDGPVRGNGHIVDELETLFAGAGWNVIKLLWGSDWD 313 A+ +A RE+LDNL+ VVNCNLQRLDGPVRGNG I+ ELE F GAGWNVIK++WGS+WD Sbjct: 247 GAIGVAGREQLDNLVMVVNCNLQRLDGPVRGNGKIIQELEGEFRGAGWNVIKIIWGSNWD 306 Query: 314 GLFARDQDGELVDALNRTVDGQLQTFAANDGAFNRQHFFGQTPGTRAIGATLTDEEINRL 373 L ARD++G L + T+DG+ Q + A DGA+ R+HFFG+ P + + ++D+++ L Sbjct: 307 PLLARDKEGILQRVMMETLDGEYQNYKAKDGAYVRKHFFGKHPKLLEMVSRMSDDDLWHL 366 Query: 374 RRGGHDMKKIFSAYQAAAQHRGQPTVILAQTKKGYGMGAAGEGKMTTHQQKKLDEESLLQ 433 RGGHD K+++ ++ A +H+GQPTV+L +T KGYGMG +GE + T HQ KKLD+E++ + Sbjct: 367 LRGGHDPHKVYAGFKQAQEHKGQPTVLLVKTVKGYGMGKSGEARNTAHQTKKLDDEAVRE 426 Query: 434 FRDRFKLPLSDEQCRALAFYKPAADSAEMKHLHARRAALGGYMP-RRQGGDARRAVPPLE 492 RDRF LP++DE + F+KPA D+ EMK+LH RRAALGGY+P RRQ D + VP L Sbjct: 427 MRDRFNLPIADEHLADIPFFKPADDAPEMKYLHERRAALGGYLPQRRQQADEKLPVPELA 486 Query: 493 A-HSQFALQADGKEMSSTMALVRQLGNLLKDPEFGRYVVPIVADEARTFGMANLFRQVGI 551 A + A+G+E+S+T A VR + LL+D G+ +VPI+ DE+RTFGM LFRQ+GI Sbjct: 487 AFKAVLDPTAEGREISTTQAYVRIISILLRDANLGQRLVPILVDESRTFGMEGLFRQIGI 546 Query: 552 YSSQGQLYEPEDIGSILYYREAKDGQILEEGITEAGAISSWTAAATAYSVHGTPMLPFYI 611 Y+ +GQLYEP D + +YRE K GQIL+EGI EAGA++SW AAAT+YS + M+PFY Sbjct: 547 YNREGQLYEPVDKDQVSFYREDKAGQILQEGINEAGAMASWIAAATSYSTNNRIMVPFYT 606 Query: 612 YYSMFGFQRIGDLIWAAADQRARGFLIGATSGRTTLGGEGLQHQDGNSLVTAASIPNCVS 671 +YSMFG QRIGDL WAA D RARGFL+G T+GRTTL GEGLQH+DG+S + A++IPNC+ Sbjct: 607 FYSMFGLQRIGDLAWAAGDMRARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCIP 666 Query: 672 YDPAYAYELAVILDEGMRRMMERGDDVFYYITVTNENEAQPSLPPGVQQGILRGLYCLD- 730 YDP +A+E+AVI+ +G++RM+E +DVFYYIT+ NEN AQP L PG ++GIL+GLY L Sbjct: 667 YDPTFAHEVAVIMHDGLKRMIENQEDVFYYITLMNENYAQPGLKPGQEEGILKGLYLLQE 726 Query: 731 --SKPGAAVRLLGSGPILKEAAAAAALLQQHWQIPAEVWSVTSYTELARDGVAAQRAQRL 788 K V+L+GSG IL+E AAA LL+ W + A+VWS S+T LARDG +R L Sbjct: 727 GAKKAKNRVQLMGSGTILREVIAAADLLKDDWGVTADVWSAPSFTLLARDGQDVERWNML 786 Query: 789 --TGSATLPYVTQQLQGSAAPVIAVSDYIRSLPESIRAFVPAD--YVTLGTDGFGRSDTR 844 T ++T LQG+A P++ +DY+R+ E +RAFVP D Y LGTDGFGRSD+R Sbjct: 787 HPTDKPRQAHITSSLQGTAGPIVVATDYMRTFAEQVRAFVPKDRTYKVLGTDGFGRSDSR 846 Query: 845 VNLRDFFEIDARWIAYTAL 863 LR+FFE++ ++ AL Sbjct: 847 AKLREFFEVNRYFVTVAAL 865 >gi|152979821|ref|YP_001353573.1| 2-oxoacid dehydrogenase subunit E1 [Janthinobacterium sp. Marseille] Length = 890 Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/891 (53%), Positives = 624/891 (70%), Gaps = 28/891 (3%) Query: 12 DIDIDAQETQEWLQALQSVLAEAGPERARFLLSRLSAAAQQWGVNWRDARNTPYLNTIRP 71 ++DID QETQEWL++L +V+ G RA +LL +L+ + TPY+NTI Sbjct: 7 EVDIDPQETQEWLESLDAVIDVEGRPRAHYLLDKLADLDLARHGDLHGRVTTPYVNTISR 66 Query: 72 AQEPPFPGGSDAQAIEERIASIMRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFN 131 ++P +PG + IE R+ + +RWNA+ MV+RA + + +GGHIA+Y SAA +++VGF+ Sbjct: 67 QRQPAYPGDA---GIERRLNAYIRWNAMVMVLRAGK-HSNVGGHIATYQSAAVMYDVGFD 122 Query: 132 HFFRARDDKFAGDVVYFQPHSAPGIYARAFLEGALSEDDLAYYRREIEAKRVGRQGLSSY 191 HFFR R D F GD+VY Q HSAPGIY RAF+EG + E + +RRE + R GLSSY Sbjct: 123 HFFRGRTDTFDGDMVYIQGHSAPGIYGRAFIEGRIDEARMDNFRRESD-----RVGLSSY 177 Query: 192 PHPWLMPHFWQFPTGSMGIGPINAIYQARFLRYMEHRGLLQDQGRKVWGVFGDGEMDEPE 251 PHP LMP FWQFPT SMG+GP+ A YQAR++RY+E+RGL Q QGRKVW GDGEMD+PE Sbjct: 178 PHPRLMPDFWQFPTVSMGLGPLTAAYQARYMRYLEYRGLKQPQGRKVWAFLGDGEMDQPE 237 Query: 252 SLAALSLASREKLDNLIFVVNCNLQRLDGPVRGNGHIVDELETLFAGAGWNVIKLLWGSD 311 SLAA+SL RE+LDNLIFVVNCNLQRLDGPVRGN ++ ELE F AGWNVIK++WGSD Sbjct: 238 SLAAISLGGRERLDNLIFVVNCNLQRLDGPVRGNSKVIQELEATFRAAGWNVIKVIWGSD 297 Query: 312 WDGLFARDQDGELVDALNRTVDGQLQTFAANDGAFNRQHFFGQTPGTRAIGATLTDEEIN 371 WD L +D G L + VDG QTF + +GA+ RQHFFG+ P A+ ++D+EI Sbjct: 298 WDRLLEKDVTGLLRRRMMECVDGDFQTFKSQNGAYVRQHFFGKYPELLAMVTDMSDDEIW 357 Query: 372 RLRRGGHDMKKIFSAYQAAAQHRGQPTVILAQTKKGYGMGAAGEGKMTTHQQKKLDEESL 431 +L RGGHD +K+++AY A + GQPTVILA+T KG+GMG AGEG+ HQ KK+ +++ Sbjct: 358 KLTRGGHDPEKVYAAYDQAVRTSGQPTVILAKTVKGFGMGEAGEGQNINHQLKKMSADAV 417 Query: 432 LQFRDRFKLPLSDEQCRALAFYKPAADSAEMKHLHARRAALGGYMPRRQGGDARRAVPPL 491 FRDRF LP+SDEQ + + +PA DS E ++L ARR ALGG++P R AVPPL Sbjct: 418 RTFRDRFALPVSDEQLEEMPYLRPAPDSEEARYLVARRKALGGHIPARFSEVEPLAVPPL 477 Query: 492 EAHSQFALQADGKE-MSSTMALVRQLGNLLKDPEFGRYVVPIVADEARTFGMANLFRQVG 550 A + LQ+ G+ +S+TM+ VR L LLKD G+ V+PIV DE+RTFGM LFRQ+G Sbjct: 478 SAFAS-QLQSSGERGVSTTMSFVRILTALLKDENLGKLVIPIVPDESRTFGMEGLFRQIG 536 Query: 551 IYSSQGQLYEPEDIGSILYYREAKDGQILEEGITEAGAISSWTAAATAYSVHGTPMLPFY 610 I+S GQLY P+D G + YY+EAKDGQIL+EGI E+GAISSW AA TAY+ HG +PFY Sbjct: 537 IHSYLGQLYTPQDAGQLSYYKEAKDGQILQEGINESGAISSWIAAGTAYANHGLATIPFY 596 Query: 611 IYYSMFGFQRIGDLIWAAADQRARGFLIGATSGRTTLGGEGLQHQDGNSLVTAASIPNCV 670 I+YSMFG QR+GDL WAAAD R RGFL+GAT+GRTTL GEGLQH DG+S V ++ IP+C+ Sbjct: 597 IFYSMFGLQRVGDLAWAAADARTRGFLLGATAGRTTLMGEGLQHDDGHSHVLSSVIPSCI 656 Query: 671 SYDPAYAYELAVILDEGMRRMMERGDDVFYYITVTNENEAQPSLPPGVQQGILRGLYCL- 729 SYDP ++YELAVI+ +G+RRM +D++YYIT+ NE+ P++P G + GIL+GLY L Sbjct: 657 SYDPTFSYELAVIIHDGLRRMYVEQEDIYYYITLLNESYQHPAMPDGAEAGILKGLYLLR 716 Query: 730 ------DSKPGAAVRLLGSGPILKEAAAAAALLQQHWQIPAEVWSVTSYTELARDGVAAQ 783 D P V+L+GSG IL+E AAA LL+Q + I +++WS TS TE+ RDG+AA+ Sbjct: 717 EHAAQQDGAP--QVQLMGSGSILREVIAAAELLEQDFGIASDIWSATSLTEVRRDGLAAE 774 Query: 784 RAQRL--TGSATLPYVTQQLQGSAAPVIAVSDYIRSLPESIRAFV-PADYVTLGTDGFGR 840 R L +PYV + L G PV+ +DY++ + + IR F+ ++ LGTDGFGR Sbjct: 775 RWNMLHPDEEMRIPYVQECLMGRRGPVVIATDYMKIVGDQIRPFINDRRFIALGTDGFGR 834 Query: 841 SDTRVNLRDFFEIDARWIAYTALCQVWGND----RARLEEAARVLDIDTGK 887 SDTR +LR FFE+D +I AL +V +D R++L EA + ID K Sbjct: 835 SDTRESLRSFFEVDRHFIVLAAL-KVLADDGSIPRSKLGEAIQRYGIDINK 884 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,199,669 Number of extensions: 96278 Number of successful extensions: 272 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 259 Number of HSP's successfully gapped: 2 Length of query: 893 Length of database: 1,221,021 Length adjustment: 92 Effective length of query: 801 Effective length of database: 880,897 Effective search space: 705598497 Effective search space used: 705598497 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)