BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3859.p (252 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 102 3e-23 gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 98 6e-22 gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Jant... 89 2e-19 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 89 3e-19 gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Jant... 87 1e-18 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 102 bits (253), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 94/186 (50%), Gaps = 2/186 (1%) Query: 9 LVTGAGSGIGRQITLALLREGYGVALAGRRLEALEETVKLAGEHGNNALVVSADVTDPVS 68 L+TGA +GIGR A REGY VA++GRR EA GN A + ADV Sbjct: 36 LITGALTGIGRATAFAFAREGYRVAVSGRREEAGNALAAELRALGNEAEFLLADVRFEAD 95 Query: 69 VKQLFGKTRERFGRLDLLFNNAGIFAPPVSLEELSVEQWKAAVDINLTGVFLCTQEAFRI 128 V+ L +T RFGR+D+ NNAG + E S + +N+ G L + R+ Sbjct: 96 VRNLVEQTVVRFGRIDVAVNNAGTEGQLAPIVEQSAANYAETFGVNVLGTMLSLKHEMRV 155 Query: 129 MKEQSPRGGRIINNGSISAHAPRPFSASYTATKHAITGLTKATSLDGRAYDIACGQIDIG 188 M Q G IIN S++ ++ Y A+KHA+ GLTK+ +L+G A + + G Sbjct: 156 MLAQGS--GSIINLSSVAGKVGIAGASVYVASKHAVEGLTKSAALEGAAAGVRVNAVAPG 213 Query: 189 NASTDM 194 +T+M Sbjct: 214 PVATEM 219 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 97.8 bits (242), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 9/184 (4%) Query: 6 RIALVTGAGSGIGRQITLALLREGYGVALAG----RRLEALEETVKLAGEHGNNALVVSA 61 + ALVTG+ SGIG I AL ++G + L G ++ L+ L +G + A Sbjct: 9 KTALVTGSTSGIGLGIAQALAQQGADIVLNGFGDANEIKTLQAA--LMRNYGVKCVHHPA 66 Query: 62 DVTDPVSVKQLFGKTRERFGRLDLLFNNAGIFAPPVSLEELSVEQWKAAVDINLTGVFLC 121 D++ P ++ + ++FGR+D+L NNAGI ++E+ VE+W A + INL+ F Sbjct: 67 DMSKPAEIEAMMAFAAQQFGRVDILVNNAGIQHTE-TIEDFPVEKWDAIIAINLSSAFHT 125 Query: 122 TQEAFRIMKEQSPRGGRIINNGSISAHAPRPFSASYTATKHAITGLTKATSLDGRAYDIA 181 T+ A +M Q+ GRIIN S+ ++Y A KH I GLTK T+L+ I Sbjct: 126 TRLALPMM--QAKNWGRIINIASVHGLVGSVQKSAYVAAKHGIVGLTKVTALEMAHTGIT 183 Query: 182 CGQI 185 C I Sbjct: 184 CNAI 187 >gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 246 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 101/193 (52%), Gaps = 10/193 (5%) Query: 5 KRIALVTGAGSGIGRQITLALLREGYGVAL--AGRRLEALEETVKL-AGEHGNNALVVSA 61 K++A++TGA GIG I L ++G+ V + A EA KL A +H A+ V A Sbjct: 6 KKVAIITGASRGIGAAIAERLAQDGFAVVINYASSATEADALVAKLQAAQH--EAIAVKA 63 Query: 62 DVTDPVSVKQLFGKTRERFGRLDLLFNNAGIFAPPVSLEELSVEQWKAAVDINLTGVFLC 121 DV + V++LF +T ++ G++D+L NNAGI SL E S E ++ IN+ G F Sbjct: 64 DVANSADVRRLFDETEQKLGKVDVLINNAGIL-QMASLAETSDELFERTFSINVRGTFNT 122 Query: 122 TQEAFRIMKEQSPRGGRIINNGSISAHAPRPFSASYTATKHAITGLTKATSLDGRAYDIA 181 +EA + + GGR++N S + P + YT +K A+ LT + + R +I Sbjct: 123 LREAATRLND----GGRVVNFSSTTVAMSLPNYSVYTGSKAAVEVLTPIFAKEMRGRNIT 178 Query: 182 CGQIDIGNASTDM 194 + G +TD+ Sbjct: 179 VNAVAPGPVATDL 191 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 88.6 bits (218), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/196 (36%), Positives = 99/196 (50%), Gaps = 15/196 (7%) Query: 6 RIALVTGAGSGIGRQITLALLREGYGVAL----AGRRLEALEETVKLAGEHGNNALVVSA 61 ++A V G GIG I L R+G VA + + +A+ + ++ AG AL + A Sbjct: 10 KVAFVQGGSRGIGAAIVKRLARDGAAVAFTYVSSADKAKAVAQEIEAAG---GRALAIHA 66 Query: 62 DVTDPVSVKQLFGKTRERFGRLDLLFNNAGIFA-PPVSLEELSVEQWKAAVDINLTGVFL 120 D +D +V+Q + FGR+D+L NNAG+ A PV E+ +E + V +N+ VF+ Sbjct: 67 DSSDASAVQQAIQAAAKAFGRIDILVNNAGVLALAPV--EDFKLEDFDRTVAVNVRSVFV 124 Query: 121 CTQEAFRIMKEQSPRGGRIINNGSISA-HAPRPFSASYTATKHAITGLTKATSLDGRAYD 179 TQEA R M E GGRII GS +A P A Y +K AI GLTK + D Sbjct: 125 ATQEAARHMGE----GGRIITIGSTNADRMPFAGGAVYAMSKAAIVGLTKGLARDLGPRG 180 Query: 180 IACGQIDIGNASTDMT 195 I + G TDM Sbjct: 181 ITVNNVQPGPVDTDMN 196 >gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 272 Score = 87.0 bits (214), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 5/194 (2%) Query: 6 RIALVTGAGSGIGRQITLALLREGYGVALAGRRLEALEETVKLAGEHGNNALVVSADVTD 65 ++ALVTGA SG+G + L G V LA RR++ L+E G A VVS DVTD Sbjct: 24 KVALVTGASSGLGARFAKVLAMAGAQVILASRRVDRLKELRAEIEAEGGAAQVVSLDVTD 83 Query: 66 PVSVKQLFGKTRERFGRLDLLFNNAGIFAPPVSLEELSVEQWKAAVDINLTGVFLCTQEA 125 S+K G +D+L NN+G+ A L +++ E + +D N G F QE Sbjct: 84 YASIKSAIAHAETETGAIDILVNNSGVSASQ-RLVDVTPEDYAHMMDTNQRGAFFVAQEV 142 Query: 126 FRIM----KEQSPRGGRIINNGSISAHAPRPFSASYTATKHAITGLTKATSLDGRAYDIA 181 + M K + RIIN GS++ P Y +K A+ +TKA +++ + I Sbjct: 143 AKRMIARHKGDPKKQHRIINIGSVAGLRVVPELGLYCMSKAAVVHMTKAMAVEWGKFGIN 202 Query: 182 CGQIDIGNASTDMT 195 I G T+M Sbjct: 203 TNAICPGYIGTEMN 216 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 573,249 Number of extensions: 22906 Number of successful extensions: 148 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 21 Length of query: 252 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 171 Effective length of database: 921,564 Effective search space: 157587444 Effective search space used: 157587444 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)