BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3858.p
         (200 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980518|ref|YP_001354955.1| 3-octaprenyl-4-hydroxybenzoate ...   323   5e-90

>gi|152980518|ref|YP_001354955.1| 3-octaprenyl-4-hydroxybenzoate
           carboxy-lyase [Janthinobacterium sp. Marseille]
          Length = 201

 Score =  323 bits (828), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 155/188 (82%), Positives = 169/188 (89%)

Query: 9   RQRLIVAITGATGAIYGVRLLEHLRKHGQVQTHLMISEAGVLNLHQELDMRRKDVDALAD 68
           R+RLI+AITGATG IYG+RLL+ LR    V+THL+ISEAGVLNLHQELDM+RKDV+ALAD
Sbjct: 13  RKRLIIAITGATGVIYGIRLLQVLRDIAGVETHLLISEAGVLNLHQELDMKRKDVEALAD 72

Query: 69  VVHNVRDVGACIASGSFASTGMVVAPCSMKTLAAVAHGLSDNLITRAADVVLKERRRLVL 128
           VVHNVRDVGA IASGSF S GM+VAPCSMKTLAAVAHG SDNLI+RAADVVLKERRRLVL
Sbjct: 73  VVHNVRDVGAAIASGSFQSDGMIVAPCSMKTLAAVAHGFSDNLISRAADVVLKERRRLVL 132

Query: 129 MVRETPFNLAHLRNMTAVTEMGGVIFPPLPGFYQRPASMEEMVDHTLGRVLDMFGISLQL 188
           MVRETPFNLAHLRNMTAVTEMGG+IFPPLPGFY RPAS+ EMVDHT GRVLD+F I   L
Sbjct: 133 MVRETPFNLAHLRNMTAVTEMGGIIFPPLPGFYHRPASIAEMVDHTTGRVLDLFDIPHAL 192

Query: 189 TPEWQGMK 196
           TP W G+K
Sbjct: 193 TPRWNGLK 200


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 457,953
Number of extensions: 17553
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 121
Effective length of database: 928,958
Effective search space: 112403918
Effective search space used: 112403918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)