BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3854.p (249 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPa... 421 e-119 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 154 5e-39 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 142 3e-35 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 141 5e-35 gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 139 1e-34 >gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 421 bits (1083), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/245 (84%), Positives = 229/245 (93%) Query: 5 TSSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGQI 64 +S L+V GL+KSYGARQVVRDV+++V SGEV+GLLGPNGAGKTTSFYMIVGLVPSD G+I Sbjct: 2 SSKLIVNGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRI 61 Query: 65 DLDGAPISRLPIHKRATLGLSYLPQEASVFRKLSVEDNIRAVLELRKEEGKALSRDEIEG 124 +LDG ISRLPIHKRA LGLSYLPQEASVFRKLSVEDNIRAVLEL++ GKAL+ ++E Sbjct: 62 ELDGVDISRLPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALNSAQLEQ 121 Query: 125 RLNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEI 184 RL+ LL +LQIEKLRE+QA+SLSGGERRRVEIARALAT+PRFVLLDEPFAG+DPIAVIEI Sbjct: 122 RLDTLLADLQIEKLRENQAMSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEI 181 Query: 185 QRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLG 244 QRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQG VLASG P++IIANESVRRVYLG Sbjct: 182 QRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIANESVRRVYLG 241 Query: 245 EHFRM 249 EHFRM Sbjct: 242 EHFRM 246 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 154 bits (389), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 142/247 (57%), Gaps = 10/247 (4%) Query: 8 LVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGQIDLD 67 L + G+ K +G Q + DV++++ G++ GL+GPNGAGKTT F +I GL +D G +L Sbjct: 7 LNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFELA 66 Query: 68 GAPISRLPIHKRATLGLSYLPQEASVFRKLSVEDNIRAVLELRKEEG--------KALSR 119 G P S HK A G++ Q +F +++ +N+ +R +G KA R Sbjct: 67 GKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAARR 126 Query: 120 DEIE--GRLNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGID 177 +E E R LL + I K E A LS G++RR+EIARALATDP+ + LDEP AG++ Sbjct: 127 EEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMN 186 Query: 178 PIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANES 237 + ++ ++ +K G +L+ +H+V+ +G+CDR +++ G +A G P ++ + + Sbjct: 187 ATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQKDPA 246 Query: 238 VRRVYLG 244 V YLG Sbjct: 247 VIEAYLG 253 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 142 bits (357), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 138/226 (61%), Gaps = 7/226 (3%) Query: 8 LVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGQIDLD 67 L V L + YGA +R +S+ V G+ + LLG NG GKTT ++G++P G + LD Sbjct: 2 LQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSLD 61 Query: 68 GAPISRLPIHKRATLGLSYLPQEASVFRKLSVEDNIRAVLELRKEEGKALSRDEIEGRLN 127 G I++L H+RA LG++Y+PQ +F +L+VE+N+ ++ + + GK S I+G + Sbjct: 62 GRDITKLKPHQRAALGIAYVPQGREIFARLTVEENL--LMGMATKSGKKAS--VIKGEVY 117 Query: 128 NLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRI 187 L L+ ++ + LSGG+++++ IARAL +P+ ++LDEP GI P + +I R+ Sbjct: 118 ELFPVLK--EMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRV 175 Query: 188 VRFLKERG-IGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEI 232 + L+ERG IG+L+ + + D ++++G V+ASG+ +E+ Sbjct: 176 ISLLRERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEM 221 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 141 bits (355), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 130/231 (56%), Gaps = 11/231 (4%) Query: 17 YGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGQIDLDGAPISRLPI 76 YGA + +S+EV GE+V L+G NGAGK+T+ I GL P G I ++G +S Sbjct: 26 YGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGSIRMNGHLVSGASP 85 Query: 77 HKRATLGLSYLPQEASVFRKLSVEDNIRAVLELRKEEGKALSRDEIEGRLNNLLHELQIE 136 + G+S+ P+ VF +L+V +N+ RK++ K RD++E + + Sbjct: 86 AEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRKDKAKV--RDDMERMFD------KFP 137 Query: 137 KLRE---SQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKE 193 +LRE A +LSGGE++ + IARAL + PR V+ DEP G+ P V +I ++R ++ Sbjct: 138 RLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIFSLIREIRS 197 Query: 194 RGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLG 244 G VLI + N L +CDR Y++ G ++ G+ E+ AN +RR YLG Sbjct: 198 EGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPEIRRAYLG 248 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 139 bits (351), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 140/249 (56%), Gaps = 15/249 (6%) Query: 3 MATSSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSD-- 60 M + L + GLK +YG + V+ V +EV GE++ L+G NGAGKTT+ I G +P+ Sbjct: 1 MTDTVLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRV 60 Query: 61 GGQIDLDGAPISRLPIHKRATLGLSYLPQEASVFRKLSVEDNIRAVLELRKEEGKALSRD 120 G I+ G PI L + L+ +P+ VF ++S+++N+ A +RD Sbjct: 61 EGHIEYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLM---------GAFTRD 111 Query: 121 EIEGRLNNLLHELQI-EKLRE---SQALSLSGGERRRVEIARALATDPRFVLLDEPFAGI 176 + +G ++ + +L+E A +LSGGE++ + +ARAL + P +LLDEP G+ Sbjct: 112 DKDGIAADIDKWFGVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGL 171 Query: 177 DPIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANE 236 PI V +I ++R + +GI +L+ + N + L +RAY++ G V G+ ++++++ Sbjct: 172 SPIMVEKIFEVIRTVSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSDP 231 Query: 237 SVRRVYLGE 245 VR YLGE Sbjct: 232 KVREAYLGE 240 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.139 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 565,299 Number of extensions: 24277 Number of successful extensions: 255 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 179 Number of HSP's successfully gapped: 64 Length of query: 249 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 168 Effective length of database: 921,564 Effective search space: 154822752 Effective search space used: 154822752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)