BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3852.p
         (206 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981889|ref|YP_001355039.1| hypothetical protein mma_3349 [...   166   1e-42

>gi|152981889|ref|YP_001355039.1| hypothetical protein mma_3349
           [Janthinobacterium sp. Marseille]
          Length = 198

 Score =  166 bits (419), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 77/189 (40%), Positives = 118/189 (62%)

Query: 8   RAAERIRLAVILVILVGAALGSFWVLQALRATGDQQPAQRPRGKPDYYLENFSYVKMGPT 67
           R A  +RL V++ +  G A GSFW+++ +R   D     + R +PD+Y E F++V+MG  
Sbjct: 5   RPANTVRLIVLIALSAGLAFGSFWLVEVMRRQTDDTLPTKQRSEPDFYAEKFNFVRMGKD 64

Query: 68  GLPRYDVSGVKMVHFPSDDSFEITKPVVHNLDQDQAPMQLYSDTARVTDDQTQIHMYGNA 127
           G  RY+++G +M H+P D+S++I KPV+++  +++ PM   S+ A V  + T++HMY N 
Sbjct: 65  GTARYNLTGTEMKHYPLDNSYQIQKPVMYSFSKERQPMVSRSERALVEKNNTEVHMYENV 124

Query: 128 NAIRAPYKGHEQMHLVSQYLLLLPDDEIVKTDKPVTMTMGTTRLSGVGMVANNATQVVQL 187
              R P  G +   L + YLL+LPDDEI+KT K V + +GT+ L+G GM ANNAT    L
Sbjct: 125 VIDRPPAAGSQHFQLKTSYLLILPDDEIMKTPKHVDIKVGTSTLNGSGMFANNATGEFNL 184

Query: 188 FGNVRGYYE 196
             NV   Y+
Sbjct: 185 SSNVNALYQ 193


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 503,573
Number of extensions: 20367
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 127
Effective length of database: 928,958
Effective search space: 117977666
Effective search space used: 117977666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)