BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3851.p
         (184 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981078|ref|YP_001355038.1| hypothetical protein mma_3348 [...   254   2e-69

>gi|152981078|ref|YP_001355038.1| hypothetical protein mma_3348
           [Janthinobacterium sp. Marseille]
          Length = 179

 Score =  254 bits (650), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/184 (67%), Positives = 140/184 (76%), Gaps = 5/184 (2%)

Query: 1   MTTPTFASTLPALALAKAATIRLMIFDVDGVLTDGGLFYGEEGEAFKRFNALDGHGIKLM 60
           M+TP        +A  +AA +RLMIFDVDGVLTDG L +G EGE  K FN LDGHGIKL+
Sbjct: 1   MSTPN-----DPVASQRAAKVRLMIFDVDGVLTDGSLHFGPEGEVSKTFNVLDGHGIKLL 55

Query: 61  QQYGTAAAIITARQSPYVLRRARDLGIAHVFQGVHDKRQAFEQLLQQLQLAPAACGYLGD 120
           QQ G + AII+ARQSP VLRRA DLGI HVFQG+HDKR AFEQLL Q      ACG++GD
Sbjct: 56  QQSGVSTAIISARQSPIVLRRASDLGIHHVFQGIHDKRSAFEQLLTQTNTTADACGFIGD 115

Query: 121 DIIDLPVLTRVGFKACVANGHREVKSRCDYVTQASGGHGAVREICDLVLAAQGNYEAALA 180
           D+IDLP+L RVGF A V N H EV+SR  YVTQASGG GA RE+CD +L AQGNYEAALA
Sbjct: 116 DVIDLPILLRVGFAASVPNAHAEVRSRVHYVTQASGGRGAARELCDFILRAQGNYEAALA 175

Query: 181 PYLA 184
           PYLA
Sbjct: 176 PYLA 179


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 396,758
Number of extensions: 14594
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 106
Effective length of database: 932,655
Effective search space: 98861430
Effective search space used: 98861430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 126 (53.1 bits)