BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3850.p
         (342 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980996|ref|YP_001355037.1| polysialic acid capsule express...   470   e-134

>gi|152980996|ref|YP_001355037.1| polysialic acid capsule expression
           protein [Janthinobacterium sp. Marseille]
          Length = 342

 Score =  470 bits (1210), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/342 (70%), Positives = 275/342 (80%)

Query: 1   MSVTDDKTTPASFSAGAARRAIELARQTLQIEADAILALKNRLRDDHAEPLALAVQALLQ 60
           MSV+     PA+F A +  RA++ A  TLQIEADAILALK R+    ++    AV  LL 
Sbjct: 1   MSVSHAPNPPATFDAQSTARALQFACDTLQIEADAILALKERITSKTSQQFIQAVTLLLN 60

Query: 61  CQGRAVVSGIGKSGHIGRKIAATLASTGTPALFMHPAEAAHGDLGMVTPKDVFIAISNSG 120
           C+GR VVSGIGKSGHI RKIA+TLASTGTPA F+H AEA+HGDLGM+T  DV I IS SG
Sbjct: 61  CKGRVVVSGIGKSGHIARKIASTLASTGTPAFFVHAAEASHGDLGMITADDVLIGISYSG 120

Query: 121 ETAELLAIVPIIKRMGAVIIAMTGNDDSSLAGMAAVHLNVGVAQEACTLNLAPTASTTAT 180
           E  ELL IVP IKRMGA +I +TGND S+LA  A VHLNV + +EAC LNLAPTASTTAT
Sbjct: 121 EAGELLGIVPTIKRMGARLITITGNDASNLAVQADVHLNVHIDKEACPLNLAPTASTTAT 180

Query: 181 LAMGDALAVSLLDARGFMEEDFARSHPGGALGRRLLTHVRDVMRSGEAIPAVRPDVSLSA 240
           LA+GDALAV+LLDARGF EEDFARSHPGGALGRRLLTHVRDVMR+GEAIP V  D +L A
Sbjct: 181 LALGDALAVALLDARGFGEEDFARSHPGGALGRRLLTHVRDVMRTGEAIPTVAKDATLYA 240

Query: 241 ALMEITRKGMAMTAVVDEQFRPLGVFTDGDLRRLLERGQDFSGFSIAEVMHAHPQTVNQD 300
           AL+E ++KGMAMTAVVD + R +GVFTDGDLRRL+E  QDFS  SIAEVMHA P++V+ D
Sbjct: 241 ALLESSKKGMAMTAVVDAEGRAIGVFTDGDLRRLIETQQDFSKLSIAEVMHASPRSVHPD 300

Query: 301 QLAVDAVALMEQFRINQLLVTDAAGVLTGALHIHDLTRAKVI 342
           QLAVDAV +ME +RINQLLVTD +G L GALHIHDLTRAKVI
Sbjct: 301 QLAVDAVDMMETYRINQLLVTDNSGKLVGALHIHDLTRAKVI 342


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 716,355
Number of extensions: 27618
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 258
Effective length of database: 910,473
Effective search space: 234902034
Effective search space used: 234902034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)