BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3848.p (541 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981433|ref|YP_001351770.1| methyl-accepting chemotaxis pro... 456 e-129 gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis pro... 431 e-122 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 405 e-114 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 400 e-113 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 398 e-112 >gi|152981433|ref|YP_001351770.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 456 bits (1172), Expect = e-129, Method: Compositional matrix adjust. Identities = 284/514 (55%), Positives = 365/514 (71%) Query: 1 MFSKLSIRSRLIFVIAFLALLLVASGVLGVISLRSTNAQMGSLYEDRLVALSQLERMSAA 60 M L+I+S L+ V++ L++LLV +G+LG+ SL +TN + ++YEDR VAL +L + Sbjct: 1 MLKNLTIKSLLLSVMSILSVLLVGTGILGLSSLSATNDALKTVYEDRTVALGELNTVITL 60 Query: 61 LDAARNGISTSIVGDSGDIDANMDKIEKALKANDAVVMKYQQTPLSSEERALLEKMIAQR 120 L + ++ SI GD + MD IEK K + Y+QT L++EE+AL K A Sbjct: 61 LTINQLDLAASIYGDPNLVLPKMDAIEKRTKTIASTFGAYEQTQLTTEEKALAGKFSADY 120 Query: 121 QKFVVEGIKPATEALRNRDFQGAIELYGGVMLKLYAEAHATLAQLMDLQRSVGREMHEQA 180 +KFV + + PA A R + E+ M L A + L+D+Q + E + Sbjct: 121 KKFVDKALVPAIAASRGGNVLRVTEIVNETMEGLILPVRADVTSLIDIQLQEAKREFEAS 180 Query: 181 QQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQGVAAGDLTQRIEVHS 240 Q R+ + I A++ G+++A M L+R I RPL+ AV VA+ VAAGDLTQ+I+V S Sbjct: 181 QARFTLVRNISIAAIIFGVLIAAFMAFWLLRLIVRPLREAVDVARSVAAGDLTQQIQVRS 240 Query: 241 QDETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQAGALEET 300 +ETGQL+QA++ MND+L V VR T+TI AS EIA GN DLSSRTE QAG+LEET Sbjct: 241 SNETGQLLQAIKDMNDSLAQTVSAVRHGTETITLASGEIASGNADLSSRTEAQAGSLEET 300 Query: 301 ASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSSNKIVDII 360 AS+ME+LTSTVR NA+NA+QA QLA SASEVAV+GG VV +VV TM SI SS KIVDII Sbjct: 301 ASSMEELTSTVRQNADNARQANQLAASASEVAVKGGVVVAEVVQTMGSIQDSSRKIVDII 360 Query: 361 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIDDSV 420 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIKVLI DSV Sbjct: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRNLAQRSAAAAKEIKVLIGDSV 420 Query: 421 TRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAITQMDESTQ 480 +V +GS V QAG T+DE+V SV++V+ ++ EI+AA QEQ+ GIE++N+AITQMDE TQ Sbjct: 421 DKVEAGSNQVTQAGKTMDEIVSSVRRVTDIMAEITAASQEQTSGIEQINQAITQMDEMTQ 480 Query: 481 QNAALVEQAAAAAQAMQEQAARLSAAVSVFRLNG 514 QNAALVEQAAAAA ++Q+QA LS V VF+L+G Sbjct: 481 QNAALVEQAAAAAASLQQQANGLSQVVGVFKLSG 514 >gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 431 bits (1109), Expect = e-122, Method: Compositional matrix adjust. Identities = 265/540 (49%), Positives = 359/540 (66%), Gaps = 5/540 (0%) Query: 1 MFSKLSIRSRLIFVIAFLALLLVASGVLGVISLRSTNAQMGSLYEDRLVALSQLERMSAA 60 MF+ LSI+ RLI +AF+ ++L+ G +GV L+STN + +Y ++L + + Sbjct: 1 MFNNLSIKMRLIGTMAFMGIMLIVGGAMGVFGLQSTNNSLQDVYGNQLASSQAINTAITR 60 Query: 61 LDAARNGISTSIVGDSGDIDANMDKIEKALK-ANDAVVMKYQQTPLSSEERALLEKMIAQ 119 L AR+ I ++ SG +A + L+ +DA +Y P++++E+ L +++ A Sbjct: 61 LFQARSTIDRVLIKSSGSKNAEIFARADTLRNESDAAWKQYYALPMNADEKKLADEVTAN 120 Query: 120 RQKFVVEGIKPATEALRNRDFQGAIELYGGVMLKLYAEAHATLAQLMDLQRSVGREMHEQ 179 R ++ EG P +A++ F+ A L L+ + + +L + Q +E Sbjct: 121 RDTYLREGALPLIKAIQAGLFEEAELLMLEKATPLFIKMTQSAEKLQEFQMKAAAASYES 180 Query: 180 AQQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQGVAAGDLTQRIEVH 239 +Q + + +L GL+V + L+RAI +PL + ++AGDLT RIEV Sbjct: 181 SQSMFSLFRIAAIGGVLFGLLVVAIAAFFLIRAIMQPLGEMLNHFSAISAGDLTSRIEVK 240 Query: 240 SQDETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQAGALEE 299 S++E G+LM LQ M +L V VR + I A+ +IA GNLDLSSRTEQQA +LEE Sbjct: 241 SRNEMGKLMGGLQVMQKSLIETVFNVRQGSTAIGVATQQIAAGNLDLSSRTEQQASSLEE 300 Query: 300 TASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSSNKIVDI 359 TAS+ME+LTSTV+ NA+NA+QA QLA SAS VA +GG VV QVVDTM IN S+ KIVDI Sbjct: 301 TASSMEELTSTVKQNADNARQANQLAASASTVAEKGGVVVSQVVDTMEEINTSAKKIVDI 360 Query: 360 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIDDS 419 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK LI DS Sbjct: 361 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGDS 420 Query: 420 VTRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAITQMDEST 479 V +V GS LVA+AG T+ EVVH VQQV+ +++EI+AA QEQS GIE+VN+AI+QMD+ T Sbjct: 421 VDKVEIGSKLVAEAGVTMKEVVHGVQQVTDIMSEITAASQEQSAGIEQVNQAISQMDQVT 480 Query: 480 QQNAALVEQAAAAAQAMQEQAARLSAAVSVFRLNGPALPGP----AAGVSAQAAMALPGK 535 QQNAALVE+AAAAA+++ EQA +L+ AVSVF+L+G A P A+ ++A A+ P K Sbjct: 481 QQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAAAAPVKKTASKIAAVASSPAPVK 540 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 405 bits (1042), Expect = e-114, Method: Compositional matrix adjust. Identities = 269/573 (46%), Positives = 357/573 (62%), Gaps = 68/573 (11%) Query: 1 MFSKLSIRSRLIFVIAFLALLLVASGVLGVISLRSTNAQMGSLYEDRLVALSQLERMSAA 60 FS + I +RL+ + L +A G+ L + +A S+ E + ERM + Sbjct: 3 FFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAK----ERMVSD 58 Query: 61 LDAARNGISTSIVGDSGDIDANMDKIEKALKANDA-----VVMKYQQTPLSSEERALLEK 115 A +G + D + + A+D+ ++ K + + +E+ L K Sbjct: 59 WAAITKASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAK 118 Query: 116 MIAQRQKFVV--EGIK--------------------PATEALRNRDFQGAIELYGGVMLK 153 ++ R+ F+ EG+ PA ++ +N F +EL M Sbjct: 119 ILDVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNH-FTEFVELERKQM-- 175 Query: 154 LYAEAHATLAQLMDLQRSVGREMHEQAQQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAI 213 A AQL D++ + R+ L+++ + + G+ A L I Sbjct: 176 -----DAGTAQLSDVEAASTRQ-----------LMLLSAMVLAFGIFCAWR----LTIGI 215 Query: 214 SRPLQRAVKVAQGVAAGDLTQRIEVHSQDETGQLMQALQQMNDNLQGIVGQVRLSTDTIA 273 +RPL+ AV A+ VA GDLT I+ S+DE GQL+ AL+ MND LQ IVG+VRL T+TI Sbjct: 216 TRPLKTAVDAARRVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETIT 275 Query: 274 TASSEIAHGNLDLSSRTEQQAGALEETASAMEQLTSTVRANAENAQQAKQLAHSASEVAV 333 TAS+EIA GNLDLSSRTEQQA +LEETAS+ME+LTSTV+ NA+NA+QA QLA SASEVA+ Sbjct: 276 TASNEIAAGNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVAL 335 Query: 334 RGGQVVRQVVDTMSSINQSSNKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 393 +GG VV QVV TMSSIN+SS KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAV Sbjct: 336 KGGDVVSQVVQTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 395 Query: 394 VASEVRSLAQRSAAAAKEIKVLIDDSVTRVGSGSALVAQAGATIDEVVHSVQQVSAVVTE 453 VA+EVRSLAQRSA+AAKEIK LI DSV +V +G+ LVA+AGAT+DE+V+S+++V+ ++ E Sbjct: 396 VATEVRSLAQRSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGE 455 Query: 454 ISAAGQEQSQGIEEVNRAITQMDESTQQNAALVEQAAAAAQAMQEQAARLSAAVSVFRL- 512 I+AA QEQS GIE++N+AI QMD TQQNA+LVE+AAAAA++MQ+QA +L V F+L Sbjct: 456 ITAASQEQSAGIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLD 515 Query: 513 -----NGPA-------LPGPAAGVSAQAAMALP 533 N P P PAAG SA A+A P Sbjct: 516 NAQEANPPRASGVTRLAPKPAAG-SAGLAVAAP 547 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 400 bits (1029), Expect = e-113, Method: Compositional matrix adjust. Identities = 251/470 (53%), Positives = 326/470 (69%), Gaps = 29/470 (6%) Query: 62 DAARNGISTSIVGDSGDIDANMDKIEKALKANDAVVMKYQQTPLSSEERALLEKMIAQRQ 121 + ARN + ++ D+ I +D IEK + K +T S + R ++ + R Sbjct: 62 ETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDARG 121 Query: 122 KFVVEGIKPATEALRNRDFQGAIELYGGVMLKLYAEAH-ATLAQLMDLQRSV-------- 172 +F P + QG + + L+AE A L ++ L R V Sbjct: 122 RFT-----PVKDKFVALVAQG---MRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMH 173 Query: 173 --GREMHE---QAQQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQGV 227 G + HE AQQ ++G+ + ++++ +G L R+I+RPL +AV +A+ V Sbjct: 174 KAGEDAHEVSANAQQ-------LVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKV 226 Query: 228 AAGDLTQRIEVHSQDETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLS 287 A GDLT I V S+DETGQL+QALQ MN+ L IV QVR+ TDTIATASS+IA GNLDLS Sbjct: 227 ADGDLTGTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLS 286 Query: 288 SRTEQQAGALEETASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMS 347 SRTE+QA +LEETAS+ME+LTSTV+ NA+NA+Q+ QLA +ASEVAVRGG VV QVV+TM Sbjct: 287 SRTEEQASSLEETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMG 346 Query: 348 SINQSSNKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAA 407 SIN S+NKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+ Sbjct: 347 SINDSANKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAS 406 Query: 408 AAKEIKVLIDDSVTRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEE 467 AAKEIK LIDDSV +V +GS LV AG T+ EVV SV++V+ ++ EI+AA QEQ+ GIE+ Sbjct: 407 AAKEIKTLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQ 466 Query: 468 VNRAITQMDESTQQNAALVEQAAAAAQAMQEQAARLSAAVSVFRLNGPAL 517 +N+A+ QMD+ TQQNAALVE+AAAAA+++Q+QA LS VSVF+L+ A+ Sbjct: 467 INQAVMQMDQVTQQNAALVEEAAAAAESLQDQANNLSQVVSVFKLDANAV 516 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 398 bits (1023), Expect = e-112, Method: Compositional matrix adjust. Identities = 258/521 (49%), Positives = 348/521 (66%), Gaps = 22/521 (4%) Query: 5 LSIRSRLIFVIAFLALLLVASGVLGVISLRSTNAQMGSLYEDRLVALSQLERMSAALD-A 63 L I RL + +LLV L + N + + DR M L+ Sbjct: 4 LKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDLNQI 63 Query: 64 ARNGISTSIVGDSGDIDANMDKIEKALKANDAVVMKYQQTPLSSEERALLEKMIAQRQKF 123 ARN + ++ + I A + +I KA + + +++ ++T S R + + A R KF Sbjct: 64 ARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADRSKF 123 Query: 124 VV---EGIKPATEALRNRDFQGAIELYGGVMLKLYAEAH-------ATLAQLMDLQRSVG 173 + + IK A+ +++ A+ L L+AE A++ +L+D Q + Sbjct: 124 LPLKDDFIKLASAGIKDE----AVAL-------LFAEVRPAQLSYLASIDKLIDYQNELM 172 Query: 174 REMHEQAQQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQGVAAGDLT 233 ++ +A + +++G+ + +++A + L R+I+RPL +AV +A+ VA GDLT Sbjct: 173 KKSGAEANAKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLT 232 Query: 234 QRIEVHSQDETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQ 293 I V S+DETGQL+QAL+ MN+ L IV QVRL TDTIA+AS +IA GNLDLSSRTEQQ Sbjct: 233 GSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQ 292 Query: 294 AGALEETASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSS 353 A +LEETAS+ME+LTSTV+ NAENA+Q+ QLA SASEVAVRGG VV +VVDTM IN S+ Sbjct: 293 ASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSA 352 Query: 354 NKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 413 KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK Sbjct: 353 KKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIK 412 Query: 414 VLIDDSVTRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAIT 473 LI DSV +V GS LV AGAT+ EVV SV++V+ +++EI+AA QEQ+ GIE++N+A+ Sbjct: 413 ELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVM 472 Query: 474 QMDESTQQNAALVEQAAAAAQAMQEQAARLSAAVSVFRLNG 514 QMD+ TQQNAALVE+AAAAA+++Q QA+ LS V VF+L+G Sbjct: 473 QMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLDG 513 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.126 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 786,070 Number of extensions: 23628 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 21 Length of query: 541 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 453 Effective length of database: 895,685 Effective search space: 405745305 Effective search space used: 405745305 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)