BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3847.p (570 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981433|ref|YP_001351770.1| methyl-accepting chemotaxis pro... 452 e-128 gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis pro... 407 e-115 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 387 e-108 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 382 e-107 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 380 e-107 >gi|152981433|ref|YP_001351770.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 452 bits (1164), Expect = e-128, Method: Compositional matrix adjust. Identities = 286/564 (50%), Positives = 384/564 (68%), Gaps = 21/564 (3%) Query: 12 ILAKLSIRVRLMLAMGFLAVLLVSSGTVGLVAIRASNHQMRSLYEDRLVAYAYLEEIESL 71 +L L+I+ L+ M L+VLLV +G +GL ++ A+N ++++YEDR VA L + +L Sbjct: 1 MLKNLTIKSLLLSVMSILSVLLVGTGILGLSSLSATNDALKTVYEDRTVALGELNTVITL 60 Query: 72 LEGSN----NGIYGIITLDSSEGWNPDEIDQRLDKIEKRLGTVAPVIKSYQATYLTAEEA 127 L + IYG +P+ + ++D IEKR T+A +Y+ T LT EE Sbjct: 61 LTINQLDLAASIYG----------DPNLVLPKMDAIEKRTKTIASTFGAYEQTQLTTEEK 110 Query: 128 LLLDKFLGLRQRFVQEGVQPAIAALRKRSFQTADDIHGGAMRKIWEETRATLDQLKELQI 187 L KF ++FV + + PAIAA R + +I M + RA + L ++Q+ Sbjct: 111 ALAGKFSADYKKFVDKALVPAIAASRGGNVLRVTEIVNETMEGLILPVRADVTSLIDIQL 170 Query: 188 RVGRELYEKEQDDYARLMFIVSSAMVAGIVLAVLEAMLLIRAISRPLGQAVEVAQAVAAG 247 + + +E Q + + I +A++ G+++A A L+R I RPL +AV+VA++VAAG Sbjct: 171 QEAKREFEASQARFTLVRNISIAAIIFGVLIAAFMAFWLLRLIVRPLREAVDVARSVAAG 230 Query: 248 DLSREVMVRSQDETGQVMQALKEMTARLHHIVSTVRASTDTITKAAHDIASGNQDLAART 307 DL++++ VRS +ETGQ++QA+K+M L VS VR T+TIT A+ +IASGN DL++RT Sbjct: 231 DLTQQIQVRSSNETGQLLQAIKDMNDSLAQTVSAVRHGTETITLASGEIASGNADLSSRT 290 Query: 308 EQQAASLEETASAMAQLTSTVKQNADNASQANQLAASASEVATRGGDVVREVVDTMTSIN 367 E QA SLEETAS+M +LTSTV+QNADNA QANQLAASASEVA +GG VV EVV TM SI Sbjct: 291 EAQAGSLEETASSMEELTSTVRQNADNARQANQLAASASEVAVKGGVVVAEVVQTMGSIQ 350 Query: 368 QSSNRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRAAAAAR 427 SS +IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVR+LAQR+AAAA+ Sbjct: 351 DSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRNLAQRSAAAAK 410 Query: 428 EIKDLIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDMVAEISAASQEQSNGIQEVDR 487 EIK LI DSVDKV GS V QAG+TM+E+V SVR+VTD++AEI+AASQEQ++GI+++++ Sbjct: 411 EIKVLIGDSVDKVEAGSNQVTQAGKTMDEIVSSVRRVTDIMAEITAASQEQTSGIEQINQ 470 Query: 488 AIVLMDSSTQQNAALVQQATAAATALQQQAQKLEQALCVFRLDDINRT------GTVTSV 541 AI MD TQQNAALV+QA AAA +LQQQA L Q + VF+L + + V Sbjct: 471 AITQMDEMTQQNAALVEQAAAAAASLQQQANGLSQVVGVFKLSGVEQNLVRDLHSYTAEV 530 Query: 542 PP-VQSHQVSRATSSDAAERVPGK 564 PP V+S +A ++ AA P K Sbjct: 531 PPQVESRSAPKALATQAASPKPQK 554 >gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 407 bits (1046), Expect = e-115, Method: Compositional matrix adjust. Identities = 243/521 (46%), Positives = 346/521 (66%), Gaps = 5/521 (0%) Query: 12 ILAKLSIRVRLMLAMGFLAVLLVSSGTVGLVAIRASNHQMRSLYEDRLVAYAYLEEIESL 71 + LSI++RL+ M F+ ++L+ G +G+ ++++N+ ++ +Y ++L + + + Sbjct: 1 MFNNLSIKMRLIGTMAFMGIMLIVGGAMGVFGLQSTNNSLQDVYGNQLASSQAINTAITR 60 Query: 72 LEGSNNGIYGIITLDSSEGWNPDEIDQRLDKIEKRLGTVAPVIKSYQATYLTAEEALLLD 131 L + + I + L S G EI R D + K Y A + A+E L D Sbjct: 61 LFQARSTIDRV--LIKSSGSKNAEIFARADTLRNESDAA---WKQYYALPMNADEKKLAD 115 Query: 132 KFLGLRQRFVQEGVQPAIAALRKRSFQTADDIHGGAMRKIWEETRATLDQLKELQIRVGR 191 + R +++EG P I A++ F+ A+ + ++ + + ++L+E Q++ Sbjct: 116 EVTANRDTYLREGALPLIKAIQAGLFEEAELLMLEKATPLFIKMTQSAEKLQEFQMKAAA 175 Query: 192 ELYEKEQDDYARLMFIVSSAMVAGIVLAVLEAMLLIRAISRPLGQAVEVAQAVAAGDLSR 251 YE Q ++ ++ G+++ + A LIRAI +PLG+ + A++AGDL+ Sbjct: 176 ASYESSQSMFSLFRIAAIGGVLFGLLVVAIAAFFLIRAIMQPLGEMLNHFSAISAGDLTS 235 Query: 252 EVMVRSQDETGQVMQALKEMTARLHHIVSTVRASTDTITKAAHDIASGNQDLAARTEQQA 311 + V+S++E G++M L+ M L V VR + I A IA+GN DL++RTEQQA Sbjct: 236 RIEVKSRNEMGKLMGGLQVMQKSLIETVFNVRQGSTAIGVATQQIAAGNLDLSSRTEQQA 295 Query: 312 ASLEETASAMAQLTSTVKQNADNASQANQLAASASEVATRGGDVVREVVDTMTSINQSSN 371 +SLEETAS+M +LTSTVKQNADNA QANQLAASAS VA +GG VV +VVDTM IN S+ Sbjct: 296 SSLEETASSMEELTSTVKQNADNARQANQLAASASTVAEKGGVVVSQVVDTMEEINTSAK 355 Query: 372 RIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRAAAAAREIKD 431 +IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQR+AAAA+EIK Sbjct: 356 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKT 415 Query: 432 LIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDMVAEISAASQEQSNGIQEVDRAIVL 491 LI DSVDKV GS LV +AG TM+EVVH V++VTD+++EI+AASQEQS GI++V++AI Sbjct: 416 LIGDSVDKVEIGSKLVAEAGVTMKEVVHGVQQVTDIMSEITAASQEQSAGIEQVNQAISQ 475 Query: 492 MDSSTQQNAALVQQATAAATALQQQAQKLEQALCVFRLDDI 532 MD TQQNAALV++A AAA +L +QA KL +A+ VF+LD + Sbjct: 476 MDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGV 516 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 387 bits (993), Expect = e-108, Method: Compositional matrix adjust. Identities = 249/537 (46%), Positives = 349/537 (64%), Gaps = 21/537 (3%) Query: 13 LAKLSIRVRLMLAMGFLAVLLVSSGTVGLVAIRASNHQMRSLYEDR----LVAYAYLEEI 68 + L I RL L+ G + +LLV T+ I N + + DR ++A +++ Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 69 ESLLEGSNNGIYGIITLDSSEGWNPDEIDQRLDKIEKRLGTVAPVIKSYQATYLTAEEAL 128 + N + ++T ++ +I + D + L + ++S + A Sbjct: 61 NQIARNMRNAL--LMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQA 118 Query: 129 LLDKFLGLRQRFVQ---EGVQPAIAALRKRSFQTADDIHGGAMRKIWEETRATLDQLKEL 185 KFL L+ F++ G++ AL + A + ++ K+ +D EL Sbjct: 119 DRSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKL-------IDYQNEL 171 Query: 186 QIRVGRELYEKEQDDYARLMFIVSSAMVAGIVLAVLEAMLLIRAISRPLGQAVEVAQAVA 245 + G E K ++ ++ + +++A + A+L R+I+RPL QAV +A+ VA Sbjct: 172 MKKSGAEANAK----ASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVA 227 Query: 246 AGDLSREVMVRSQDETGQVMQALKEMTARLHHIVSTVRASTDTITKAAHDIASGNQDLAA 305 GDL+ ++V S+DETGQ++QALK+M L IV+ VR TDTI A+H IA+GN DL++ Sbjct: 228 DGDLTGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSS 287 Query: 306 RTEQQAASLEETASAMAQLTSTVKQNADNASQANQLAASASEVATRGGDVVREVVDTMTS 365 RTEQQA+SLEETAS+M +LTSTVKQNA+NA Q+NQLA SASEVA RGG VV +VVDTM Sbjct: 288 RTEQQASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGE 347 Query: 366 INQSSNRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRAAAA 425 IN S+ +IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQR+A+A Sbjct: 348 INDSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASA 407 Query: 426 AREIKDLIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDMVAEISAASQEQSNGIQEV 485 A+EIK+LI DSVDKV GS LV+ AG TM EVV SV++VTD+++EI+AASQEQ++GI+++ Sbjct: 408 AKEIKELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQI 467 Query: 486 DRAIVLMDSSTQQNAALVQQATAAATALQQQAQKLEQALCVFRLDDINRTGTVTSVP 542 ++A++ MD TQQNAALV++A AAA +LQ QA L Q + VF+LD + T V +VP Sbjct: 468 NQAVMQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLDG-HGTTVVNAVP 523 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 382 bits (980), Expect = e-107, Method: Compositional matrix adjust. Identities = 248/550 (45%), Positives = 343/550 (62%), Gaps = 37/550 (6%) Query: 12 ILAKLSIRVRLMLAMGFLAVLLVSSGTVGLVAIRASNHQMRSLYEDRLVAYAYLEEIESL 71 + + I RLML G + L ++ G+ + A + RS+ E + + + ++ Sbjct: 3 FFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWAAI 62 Query: 72 LEGSNNGIYGII-TLDS-----SEGWNPDEIDQRLDKIEKRLGTVAPVIKSYQATYLTAE 125 + S G+ + D S + D+ Q ++ I+K + P++ + Q L A+ Sbjct: 63 TKASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQK----LEPLLNTDQEKELYAK 118 Query: 126 EALLLDKFLGLRQ---RFVQEGVQPAIAALRKRSFQTADDIHGGAMRKIWEETRATLD-- 180 + FL R+ + EG + A +F A D + E R +D Sbjct: 119 ILDVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAG 178 Query: 181 --QLKELQIRVGRELYEKEQDDYARLMFIVSSAMVAGIVLAVLEAMLLIRAISRPLGQAV 238 QL +++ R+L ++ SAMV + + A L I+RPL AV Sbjct: 179 TAQLSDVEAASTRQL-------------MLLSAMV--LAFGIFCAWRLTIGITRPLKTAV 223 Query: 239 EVAQAVAAGDLSREVMVRSQDETGQVMQALKEMTARLHHIVSTVRASTDTITKAAHDIAS 298 + A+ VA GDL+ ++ S+DE GQ++ ALK+M L IV VR T+TIT A+++IA+ Sbjct: 224 DAARRVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAA 283 Query: 299 GNQDLAARTEQQAASLEETASAMAQLTSTVKQNADNASQANQLAASASEVATRGGDVVRE 358 GN DL++RTEQQA+SLEETAS+M +LTSTVKQNADNA QANQLA SASEVA +GGDVV + Sbjct: 284 GNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQ 343 Query: 359 VVDTMTSINQSSNRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSL 418 VV TM+SIN+SS +IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSL Sbjct: 344 VVQTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSL 403 Query: 419 AQRAAAAAREIKDLIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDMVAEISAASQEQ 478 AQR+A+AA+EIK LI DSV KV G+ LV +AG TM+E+V+S+R+VTD++ EI+AASQEQ Sbjct: 404 AQRSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQ 463 Query: 479 SNGIQEVDRAIVLMDSSTQQNAALVQQATAAATALQQQAQKLEQALCVFRLDDIN----- 533 S GI+++++AI MD TQQNA+LV++A AAA ++Q QA+KL Q + F+LD+ Sbjct: 464 SAGIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNAQEANPP 523 Query: 534 RTGTVTSVPP 543 R VT + P Sbjct: 524 RASGVTRLAP 533 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 380 bits (977), Expect = e-107, Method: Compositional matrix adjust. Identities = 232/437 (53%), Positives = 303/437 (69%), Gaps = 3/437 (0%) Query: 95 EIDQRLDKIEKRLGTVAPVIKSYQATYLTAEEALLLDKFLGLRQRFVQEGVQPAIAALRK 154 +I LD IEK T+A + T + + + R RF V+ AL Sbjct: 78 QIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDARGRFTP--VKDKFVALVA 135 Query: 155 RSFQTADDIHGGA-MRKIWEETRATLDQLKELQIRVGRELYEKEQDDYARLMFIVSSAMV 213 + + I A +R E LD+L E Q + + E + A +V V Sbjct: 136 QGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAHEVSANAQQLVGILSV 195 Query: 214 AGIVLAVLEAMLLIRAISRPLGQAVEVAQAVAAGDLSREVMVRSQDETGQVMQALKEMTA 273 ++++ L R+I+RPL QAV +A+ VA GDL+ ++V S+DETGQ++QAL++M Sbjct: 196 IAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSKDETGQLLQALQDMNN 255 Query: 274 RLHHIVSTVRASTDTITKAAHDIASGNQDLAARTEQQAASLEETASAMAQLTSTVKQNAD 333 L IV+ VR TDTI A+ IA+GN DL++RTE+QA+SLEETAS+M +LTSTVKQNAD Sbjct: 256 GLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQNAD 315 Query: 334 NASQANQLAASASEVATRGGDVVREVVDTMTSINQSSNRIVDIIGVIDGIAFQTNILALN 393 NA Q+NQLA +ASEVA RGG VV +VV+TM SIN S+N+IVDIIGVIDGIAFQTNILALN Sbjct: 316 NARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIGVIDGIAFQTNILALN 375 Query: 394 AAVEAARAGEQGRGFAVVAAEVRSLAQRAAAAAREIKDLIDDSVDKVGKGSALVNQAGQT 453 AAVEAARAGEQGRGFAVVA+EVR+LAQR+A+AA+EIK LIDDSV+KV GS LV+ AG T Sbjct: 376 AAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVEKVNNGSRLVHDAGTT 435 Query: 454 MEEVVHSVRKVTDMVAEISAASQEQSNGIQEVDRAIVLMDSSTQQNAALVQQATAAATAL 513 M EVV SVR+VTD++ EI+AASQEQ++GI+++++A++ MD TQQNAALV++A AAA +L Sbjct: 436 MAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQNAALVEEAAAAAESL 495 Query: 514 QQQAQKLEQALCVFRLD 530 Q QA L Q + VF+LD Sbjct: 496 QDQANNLSQVVSVFKLD 512 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.127 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 835,093 Number of extensions: 24760 Number of successful extensions: 196 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 18 Length of query: 570 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 482 Effective length of database: 895,685 Effective search space: 431720170 Effective search space used: 431720170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)