BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3845.p
         (952 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980946|ref|YP_001355031.1| excinuclease ABC subunit A [Jan...  1748   0.0  

>gi|152980946|ref|YP_001355031.1| excinuclease ABC subunit A
           [Janthinobacterium sp. Marseille]
          Length = 954

 Score = 1748 bits (4527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 845/950 (88%), Positives = 904/950 (95%)

Query: 1   MEEIRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           M+EIRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDEIRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLQLMEKPDVDMIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYC 120
           ARQFLQLMEKPDVD+IEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYC
Sbjct: 61  ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYC 120

Query: 121 PDHPEHPLEAQSVSQMVDAVLALPEDTKLMIMAPVVANRKGEHADLFEEMQAQGFVRFRI 180
           PDHPE+PL AQSVSQMVDAVLA+PEDTKLMIMAPVVANRKGEH DLFE+MQAQGFVRFR+
Sbjct: 121 PDHPENPLAAQSVSQMVDAVLAMPEDTKLMIMAPVVANRKGEHVDLFEQMQAQGFVRFRV 180

Query: 181 QSGTGTAKVYEVDELPKLKKTEKHTIDVVIDRVKVKAEIKQRLAESFETALRLADGRAIA 240
           QSGT  A +Y+VD LPKLKK EKHTIDVVIDR+KVKA+IKQRLAESFETALRLA+GRA+ 
Sbjct: 181 QSGTNNAHIYDVDALPKLKKAEKHTIDVVIDRIKVKADIKQRLAESFETALRLAEGRALV 240

Query: 241 LEMDSGKEHLYSNKFACPICGYSLQELEPRLFSFNNPMGACPECDGLGHIEFFDPKRIVA 300
           LEMDSG EHLYSNKFACP+CGYSLQELEPRLFSFNNPMGACPECDGLGHIEFFDPKRIVA
Sbjct: 241 LEMDSGVEHLYSNKFACPVCGYSLQELEPRLFSFNNPMGACPECDGLGHIEFFDPKRIVA 300

Query: 301 FPNLSLASGAIKGWDRRNQFYFQMLTSIAAFYDFDLDVPFEQLDDKAQQVVLYGSGRQAI 360
           FPNLSLASGA+KGWDRRNQFYFQML+++A +YDFD+D+PFE+L + AQQ VL+GSG+Q I
Sbjct: 301 FPNLSLASGAVKGWDRRNQFYFQMLSNLAEYYDFDIDMPFEKLPEAAQQAVLFGSGKQNI 360

Query: 361 PFAYVNERGRTVVKEHTFEGVVNNLQRRYRETDSMAVKEELAKFINEKQCPSCHGARLRV 420
           PF YVNE+GRTV++EHTFEGVVNNLQRRYRETDSMAVKEELAKFINEK+CPSC GARLRV
Sbjct: 361 PFTYVNEKGRTVIREHTFEGVVNNLQRRYRETDSMAVKEELAKFINEKECPSCQGARLRV 420

Query: 421 EARYVKVGTGKQQRAIYEVAATPLRETLSFFETLKLTGAKKEIADRIIKEIVSRLTFLNN 480
           EAR V VG GKQ+RAI+EVAATPLR+TL FFETL LTGAKKEIADRIIKEIVSRL FLNN
Sbjct: 421 EARNVMVGNGKQKRAIFEVAATPLRQTLEFFETLVLTGAKKEIADRIIKEIVSRLKFLNN 480

Query: 481 VGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIETLK 540
           VGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIETLK
Sbjct: 481 VGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIETLK 540

Query: 541 HLRDIGNTVLVVEHDEDAIRTADYVVDMGIGAGVHGGDVIAHGPLPDILKNKKSLTAKYL 600
           HLRDIGN+VLVVEHDEDAIR ADYVVDMGIGAGVHGG+VIA G L DILK+KKSLTA+YL
Sbjct: 541 HLRDIGNSVLVVEHDEDAIRCADYVVDMGIGAGVHGGEVIAEGTLKDILKSKKSLTAQYL 600

Query: 601 NGSLEIAVPKKRTPCDESRMLTITGATGNNLKNVDLELPVGLLTCVTGVSGSGKSTLVND 660
           NG+L IAVPKKRTP +  +   ITGATGNNLKNV LELPVGLLTCVTGVSGSGKSTLVND
Sbjct: 601 NGTLGIAVPKKRTPPNPKKQFVITGATGNNLKNVTLELPVGLLTCVTGVSGSGKSTLVND 660

Query: 661 TLYLSAARHLYGSQTEPAAHEAIGGLEHFDKVIAVDQAPIGRTPRSNPATYTGLFTPIRD 720
           TLY +A+RHLYGSQ EPA H++I G EHFDKVI+VDQAPIGRTPRSNPATYTGLFTPIRD
Sbjct: 661 TLYHAASRHLYGSQAEPAPHDSISGFEHFDKVISVDQAPIGRTPRSNPATYTGLFTPIRD 720

Query: 721 LFATVPMAKERGYSAGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCHGKRYNR 780
           LFATVP +KERGYSAGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCHG RYNR
Sbjct: 721 LFATVPTSKERGYSAGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCHGNRYNR 780

Query: 781 ETLEVQYKGKNITEILDMTVEDAHEFFKPVPLIARKLQTLLDVGLGYIKLGQSATTLSGG 840
           ETLE+QYKGKNITE+L MTVE+AH FFKPVP+IARKLQTLLDVGLGYI+LGQSATTLSGG
Sbjct: 781 ETLEIQYKGKNITEVLGMTVEEAHVFFKPVPVIARKLQTLLDVGLGYIRLGQSATTLSGG 840

Query: 841 EAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIDLLLKVIHRLRDQGNTVTIIEHNLD 900
           EAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIDLLLKVIHRLRDQGNTV IIEHNLD
Sbjct: 841 EAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIDLLLKVIHRLRDQGNTVVIIEHNLD 900

Query: 901 VIKTADWIIDLGPEGGAGGGRIVAAGTPEEVARNPASVTGKYLAPLLKKK 950
           VIKTADW++D+GPEGGAGGG+++ AGTPE++A+NPAS TGKYLAPLLK+K
Sbjct: 901 VIKTADWLVDMGPEGGAGGGQVIGAGTPEDLAKNPASFTGKYLAPLLKQK 950


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 2,171,128
Number of extensions: 93725
Number of successful extensions: 498
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 1
Length of query: 952
Length of database: 1,221,021
Length adjustment: 92
Effective length of query: 860
Effective length of database: 880,897
Effective search space: 757571420
Effective search space used: 757571420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)